Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2115 |
Symbol | |
ID | 4923599 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2450005 |
End bp | 2451540 |
Gene Length | 1536 bp |
Protein Length | 511 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640163700 |
Product | lytic transglycosylase, catalytic |
Protein accession | YP_001094240 |
Protein GI | 127513043 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1388] FOG: LysM repeat |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000101549 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCTTAC CCATTGTCCT GGTCGCAGGG GGACTCTCCC TGCTCACAGG CTGTCAAACT TTTACCCAGC CGGAACCGGC TGCGCCGGCG ATCACCACAG CGCCCGTGGT CGTCGAGCCT CAAGTTATCG CTCCTGTCGA GCCTGAGCCA ATTCAGATCA CCGATGTGTG GCAACGTATC CGCCTGGGCC TCACTCTCCC AGTACCAGAT CAGAAACTGG TTAATCAATA CCGTAACTGG TACCTGAAAC ATCCCCAGCA CCTGGCCCGG GTATCGGAGC GCGCCGAACC CTTCATGTAT CTGATCGTCG AAGAAATTGA GAAACGCAAC CTGCCGATAG AGTTAGCGCT GCTGCCGATC GTCGAGAGCG CCTTCGATCC CTTCGCCTAT TCCCACGGCG CCGCCTCAGG CCTGTGGCAG TTTACCGCCC CCATGGCTAA ACACTTTGGC CTGGAGATGA ACTGGTGGTA CGACGGTCGC CGCGATGTGC CCGCCGCCAC CGTTGCCGCG CTGGATATGA TGGAGTACCT CTATCAGAAG ACACACAACA ACTGGCTGTA CGCCATCGCC GCCTATAACA CGGGCGAAGG CCGGGTGCTC AACGCAGTTA AGCGCAACGA GGCCAAGGGG CTGGCGACCG ACTTCTGGGC ACTAGACTTA CCACGGGAGA CTGAGCGCTA CGTGCCTCAG CTACTGGCAC TGGCCGATGT GATCGCCAAC GCCGATGATT ACGGCATCTC CCTCTACCCC ATTCCTAATG AGCCACAGCT CAAGGTTGTC GAGGTGGGCA GTCAGATCGA TCTGGCACTG GCCGCCGACA TGGCAGGCAT GAAGCTCAAC GAGCTACATT CCCTCAACCC AGGCTTTAAC CAGTGGGCGA CGGCGCCCGA AGGCCCACAT CGTCTGGTGG TCCCCCTGGA TCACGCCGAG CTGTTTGAAA CCAAGCTGGC CGCCAGCGAC CAAGACCAAC GCCTCAAGTG GCAGCGCTAT AAGATCAAGT CCGGCGATAG CCTGGGGCTG ATAGCCAAGC GTTTTAACAC TACACCGTCG GCCCTTCGCG CGGTAAATGA CATAAAGAAC AACCGCATCA TCGCAGGTAA GCATCTGTTG ATCCCTGTCT CCTCCAAGGA TCCGGCAAAA TATCTGCTCT CGGCCGAGCA GCGCCTGCAA AAGCGGCAGT CCGGCGGCAG CGGCTATAAG CTGAGCTACA AGGTAAAATC TGGCGACTCA CTCTGGCTGA TCGCCAAGCA GCACAAGGTG AGCGTTGCCA AGCTTGCCAA GTGGAATGGT ATGGCGCCAA AGGATCCCCT CTCTATCGGT CAGAAGCTGG TGATCTGGCA ACAGGGCGAC AGCAAGGCGG TGACCCGTAC GGTGAATTAC ACGGTACGCT CCGGCGACTC ACTGGCTAAG ATAGCCACTA AGTTTAATGT CAGCGTGAGC CAGTTGGTGA AGTGGAACAG CCTCTCGACC AAGAAGTACC TGCAACCAGG CCAGAAGCTG ACCCTGTATG TGGATGTGAC TAAATCTCGG GTGTAA
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Protein sequence | MRLPIVLVAG GLSLLTGCQT FTQPEPAAPA ITTAPVVVEP QVIAPVEPEP IQITDVWQRI RLGLTLPVPD QKLVNQYRNW YLKHPQHLAR VSERAEPFMY LIVEEIEKRN LPIELALLPI VESAFDPFAY SHGAASGLWQ FTAPMAKHFG LEMNWWYDGR RDVPAATVAA LDMMEYLYQK THNNWLYAIA AYNTGEGRVL NAVKRNEAKG LATDFWALDL PRETERYVPQ LLALADVIAN ADDYGISLYP IPNEPQLKVV EVGSQIDLAL AADMAGMKLN ELHSLNPGFN QWATAPEGPH RLVVPLDHAE LFETKLAASD QDQRLKWQRY KIKSGDSLGL IAKRFNTTPS ALRAVNDIKN NRIIAGKHLL IPVSSKDPAK YLLSAEQRLQ KRQSGGSGYK LSYKVKSGDS LWLIAKQHKV SVAKLAKWNG MAPKDPLSIG QKLVIWQQGD SKAVTRTVNY TVRSGDSLAK IATKFNVSVS QLVKWNSLST KKYLQPGQKL TLYVDVTKSR V
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