Gene Shew_2115 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2115 
Symbol 
ID4923599 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2450005 
End bp2451540 
Gene Length1536 bp 
Protein Length511 aa 
Translation table11 
GC content58% 
IMG OID640163700 
Productlytic transglycosylase, catalytic 
Protein accessionYP_001094240 
Protein GI127513043 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1388] FOG: LysM repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000101549 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCTTAC CCATTGTCCT GGTCGCAGGG GGACTCTCCC TGCTCACAGG CTGTCAAACT 
TTTACCCAGC CGGAACCGGC TGCGCCGGCG ATCACCACAG CGCCCGTGGT CGTCGAGCCT
CAAGTTATCG CTCCTGTCGA GCCTGAGCCA ATTCAGATCA CCGATGTGTG GCAACGTATC
CGCCTGGGCC TCACTCTCCC AGTACCAGAT CAGAAACTGG TTAATCAATA CCGTAACTGG
TACCTGAAAC ATCCCCAGCA CCTGGCCCGG GTATCGGAGC GCGCCGAACC CTTCATGTAT
CTGATCGTCG AAGAAATTGA GAAACGCAAC CTGCCGATAG AGTTAGCGCT GCTGCCGATC
GTCGAGAGCG CCTTCGATCC CTTCGCCTAT TCCCACGGCG CCGCCTCAGG CCTGTGGCAG
TTTACCGCCC CCATGGCTAA ACACTTTGGC CTGGAGATGA ACTGGTGGTA CGACGGTCGC
CGCGATGTGC CCGCCGCCAC CGTTGCCGCG CTGGATATGA TGGAGTACCT CTATCAGAAG
ACACACAACA ACTGGCTGTA CGCCATCGCC GCCTATAACA CGGGCGAAGG CCGGGTGCTC
AACGCAGTTA AGCGCAACGA GGCCAAGGGG CTGGCGACCG ACTTCTGGGC ACTAGACTTA
CCACGGGAGA CTGAGCGCTA CGTGCCTCAG CTACTGGCAC TGGCCGATGT GATCGCCAAC
GCCGATGATT ACGGCATCTC CCTCTACCCC ATTCCTAATG AGCCACAGCT CAAGGTTGTC
GAGGTGGGCA GTCAGATCGA TCTGGCACTG GCCGCCGACA TGGCAGGCAT GAAGCTCAAC
GAGCTACATT CCCTCAACCC AGGCTTTAAC CAGTGGGCGA CGGCGCCCGA AGGCCCACAT
CGTCTGGTGG TCCCCCTGGA TCACGCCGAG CTGTTTGAAA CCAAGCTGGC CGCCAGCGAC
CAAGACCAAC GCCTCAAGTG GCAGCGCTAT AAGATCAAGT CCGGCGATAG CCTGGGGCTG
ATAGCCAAGC GTTTTAACAC TACACCGTCG GCCCTTCGCG CGGTAAATGA CATAAAGAAC
AACCGCATCA TCGCAGGTAA GCATCTGTTG ATCCCTGTCT CCTCCAAGGA TCCGGCAAAA
TATCTGCTCT CGGCCGAGCA GCGCCTGCAA AAGCGGCAGT CCGGCGGCAG CGGCTATAAG
CTGAGCTACA AGGTAAAATC TGGCGACTCA CTCTGGCTGA TCGCCAAGCA GCACAAGGTG
AGCGTTGCCA AGCTTGCCAA GTGGAATGGT ATGGCGCCAA AGGATCCCCT CTCTATCGGT
CAGAAGCTGG TGATCTGGCA ACAGGGCGAC AGCAAGGCGG TGACCCGTAC GGTGAATTAC
ACGGTACGCT CCGGCGACTC ACTGGCTAAG ATAGCCACTA AGTTTAATGT CAGCGTGAGC
CAGTTGGTGA AGTGGAACAG CCTCTCGACC AAGAAGTACC TGCAACCAGG CCAGAAGCTG
ACCCTGTATG TGGATGTGAC TAAATCTCGG GTGTAA
 
Protein sequence
MRLPIVLVAG GLSLLTGCQT FTQPEPAAPA ITTAPVVVEP QVIAPVEPEP IQITDVWQRI 
RLGLTLPVPD QKLVNQYRNW YLKHPQHLAR VSERAEPFMY LIVEEIEKRN LPIELALLPI
VESAFDPFAY SHGAASGLWQ FTAPMAKHFG LEMNWWYDGR RDVPAATVAA LDMMEYLYQK
THNNWLYAIA AYNTGEGRVL NAVKRNEAKG LATDFWALDL PRETERYVPQ LLALADVIAN
ADDYGISLYP IPNEPQLKVV EVGSQIDLAL AADMAGMKLN ELHSLNPGFN QWATAPEGPH
RLVVPLDHAE LFETKLAASD QDQRLKWQRY KIKSGDSLGL IAKRFNTTPS ALRAVNDIKN
NRIIAGKHLL IPVSSKDPAK YLLSAEQRLQ KRQSGGSGYK LSYKVKSGDS LWLIAKQHKV
SVAKLAKWNG MAPKDPLSIG QKLVIWQQGD SKAVTRTVNY TVRSGDSLAK IATKFNVSVS
QLVKWNSLST KKYLQPGQKL TLYVDVTKSR V