Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2111 |
Symbol | |
ID | 4923595 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2446949 |
End bp | 2447677 |
Gene Length | 729 bp |
Protein Length | 242 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640163696 |
Product | DNA polymerase III, epsilon subunit |
Protein accession | YP_001094236 |
Protein GI | 127513039 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family [TIGR01406] DNA polymerase III, epsilon subunit, Proteobacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000449377 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATATTA TCTCCAATGC TAAGCGCCAA GTAATTCTCG ATACCGAAAC CACGGGTATG AACCAAGGGG CCGGTGCCGT CTATTTTGGC CATCGTATTA TCGAGATAGG CTGTGTCGAG GTGATTAACC GTAAGCTGAC CGGCCGCCAT TTTCACGAAT ATATCAATCC GATGCAGGCG ATCGACGAAG AGGCGATCAC GGTGCACGGT ATCACCAACG AGTTTGTGGC CGATAAGCCT GTGTTTGCCC AGATAGCGCC TGCCTTCCTC GAGTTTATCG ACGGCGCCGA GATTGTGGCC CATAACGCGA ACTTCGACGT GAGCTTCATG GACCATGAGT TTTCGCTGCT TACCCCCAGA GGACCCAAGA CCACAGATAT CTGTCAGGTG TTGGATTCGC TGGAGATCGC CAAGTTTCTT CACCCAGGTC AGAAGAATAA CCTGGACGCC CTGTGTAAGC GCTACGGCAT AGATAACTCA CGCCGCGAAC TCCACGGCGC ATTGTTGGAT GCCGAGATCC TGGCCGATGT TTATCTCATC ATGACGGGGG GGCAGACCAA GTTTGAACTC TCAAATGAGA AGCCGGGGCA GGAGAGCGGT GGCATCATAC GTCTCGCAAA TAATCGTCCA AGCCTTAAAG TGATCGGCGC ATCGGCCGAT GAACTGAATA TGCATGAGCA AAGATTAGAT TTAGTCGAAA AATCAGGACA ATGTATTTGG CGAGGATAA
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Protein sequence | MNIISNAKRQ VILDTETTGM NQGAGAVYFG HRIIEIGCVE VINRKLTGRH FHEYINPMQA IDEEAITVHG ITNEFVADKP VFAQIAPAFL EFIDGAEIVA HNANFDVSFM DHEFSLLTPR GPKTTDICQV LDSLEIAKFL HPGQKNNLDA LCKRYGIDNS RRELHGALLD AEILADVYLI MTGGQTKFEL SNEKPGQESG GIIRLANNRP SLKVIGASAD ELNMHEQRLD LVEKSGQCIW RG
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