| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2104 |
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| Symbol | |
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| ID | 4923640 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2435305 |
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| End bp | 2437026 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640163686 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001094229 |
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| Protein GI | 127513032 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3104] Dipeptide/tripeptide permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.437602 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACGACCC CTGTACGTAC CCCTCTGCCC AGTACCTTTT ATGTGGCCAA TACCATGGAG
ATCTTCGAGC GTCTCGCTTG GTATGGCTTC TTTACCCTCT CCTCCCTCTA CATGACCTCT
CCTGCTCACC AGGGGGGCTT AGGCTTTAGC GAACAGGAGC GAGGCCTGCT GCAGGGAATG
ATCCCCTTCT TTCTCTACCT GTTTCCTGTG CTTACCGGCG CCCTGGCCGA TCGCTATGGC
TACCGTAAAA TGTTTCTTAT CGCCTACGCC ATCATGTGCC CCAGCTATTT CCTCCTGGGT
CAGGTGAGCA GCTTTAGCGG CTTCTTCATC GCCTTCATGG GGGTCGCCAT AGGCGCGGCC
TGCTTTAAAC CTGTGGTGAC GGGCACTGTG GCACGCACAA CAGATCACAC CAACCGCGGC
CTGGGTTTTG GCATCTTCTA TATGATGGTC AATGTGGGCG GCTTCCTCGG CCCCTTCATC
GCAGGTTATG TCCGCGCCAT CAGCTGGGAC TGGGTCTTCA TCATGTCGGC GATCTGGATA
GGCATTAACT TCATACCGGC AACCTTCTTC TATCGCGAGC CGACGGATCT CCACCAGCAG
CGGGGCAAGC CGCTGTCTCA GGTGTTGAGA GACATCCAAG AGGTGCTGGG CAACGCCCGT
TTCGCCCTGC TGTTTTTCGG CACCTTAGTG ATCCTGCTCT CCTACGGCGC CAAGTGGATC
AGTGGCGAGC AGTGCCTCAC CATCTATCTG GTGTGGTTTA GTCTGCATTT TCTCTGGAAC
ACGCTGGCCA AGTCAGACAA GCAACTGCCC TGGTATAGGC AGAAGATCGC CCTGGGCAAC
AAGCCCTTCG TGATCTACCT GCTTATCCTC TCCGGTTTCT GGATGGTCTA CCAGCAGATC
TTTATCACTC TGCCCATCTA TATCCGAGAC TTTGTCGATA CCTCAGATCT GGTTGCCATG
CTCGCCCCCT GGCCCGGGCT GCTCGACTTC TTCGCCCCCG TGGATATCAC TCTACTCAGC
GACGAGCTAC TGAGCGCGGC AAAAGCCTAC ACAGCAGGAA GCCTGAGCCT GTCAGAGGTC
TACTTCGACT TGGTGCATGC CAAAGTAATG ATCCCAAGGG AGGAGCTGGG CGCAGCCCTT
GGCGCAATCG CACAAAGCCC AGAGCTGGCC AGTCAATACA GCCAGCAGTT CGCCCAGCAG
TATCGTCAGG TTAACCCCGA GTACCTTATC GGCTTGAACT TCCTCTCTAT CGTGCTGATG
CAGGTGATGG TAAGCCGCAT TGCCGAGCGC TTCAGTCCGC TACCTGTATT GGTGGCCGGC
ACCCTCATCC TGGCACTGGG TACGGCGCTG GGTGGACTGG CCCACGGCAT ACTCATGGGC
GGCGCCATGG TGCTCACCTC TATCTTAGTC TTCTCTATCG GCGAGATGGT GGCGTCCCCT
AAGAGCCAGG AATATGTGGC CAGCTTTGCG CCCCAGGATA AGAAGGCGAT GTTTATGGGC
TACTATTTTG TCTCATCGGC CATCGGCTTC CTGTTGGCGG GCCCGCTATC GGGTTACCTC
TACGCCGAAG TGGCTAAGGG CGCCGAGCAG CCTGCCCTGA TGTGGTACAT CATAGGCGGC
TTCGGCCTGC TGGCCGCCAT AGGCCTGGTA CTGTTTCACC GCTTTGGTGC CAAACAGACA
TTATCACAGG CGCAGCCAAC CGCCTTAGGC GCGCAAGGCT AG
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| Protein sequence | MTTPVRTPLP STFYVANTME IFERLAWYGF FTLSSLYMTS PAHQGGLGFS EQERGLLQGM
IPFFLYLFPV LTGALADRYG YRKMFLIAYA IMCPSYFLLG QVSSFSGFFI AFMGVAIGAA
CFKPVVTGTV ARTTDHTNRG LGFGIFYMMV NVGGFLGPFI AGYVRAISWD WVFIMSAIWI
GINFIPATFF YREPTDLHQQ RGKPLSQVLR DIQEVLGNAR FALLFFGTLV ILLSYGAKWI
SGEQCLTIYL VWFSLHFLWN TLAKSDKQLP WYRQKIALGN KPFVIYLLIL SGFWMVYQQI
FITLPIYIRD FVDTSDLVAM LAPWPGLLDF FAPVDITLLS DELLSAAKAY TAGSLSLSEV
YFDLVHAKVM IPREELGAAL GAIAQSPELA SQYSQQFAQQ YRQVNPEYLI GLNFLSIVLM
QVMVSRIAER FSPLPVLVAG TLILALGTAL GGLAHGILMG GAMVLTSILV FSIGEMVASP
KSQEYVASFA PQDKKAMFMG YYFVSSAIGF LLAGPLSGYL YAEVAKGAEQ PALMWYIIGG
FGLLAAIGLV LFHRFGAKQT LSQAQPTALG AQG
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