| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2095 |
|---|
| Symbol | |
|---|
| ID | 4923631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2421161 |
|---|
| End bp | 2422906 |
|---|
| Gene Length | 1746 bp |
|---|
| Protein Length | 581 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640163677 |
|---|
| Product | phosphomethylpyrimidine kinase |
|---|
| Protein accession | YP_001094220 |
|---|
| Protein GI | 127513023 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
[COG0352] Thiamine monophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00097] phosphomethylpyrimidine kinase
[TIGR00693] thiamine-phosphate pyrophosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCTG AAAAACCTAT TGTCTGGACC ATTGCCGGTT CAGACAGCGG GGGCGGTGCG
GGCATTCAGG CTGATCTTGC GACCATGGCG GATCTGGACT GCCATGGTTG CAGCGTGATC
ACCTGCGTTA CCGCGCAAAA CTCGGTGGCG GTTAACGGTG TCGAGCCTGT GAGTGAGGCT
ATCTTGCTCG CTCAGCTCGA TACCCTGCTG GTAGATCTGC CGCCAAGGGC GATCAAGATA
GGGCTGCTTG CCAATCAGCG TCAGATTAAT CTTGTCGCCG ATTGGCTGGC GACCCATATG
GCGCCACTGA AAACGGATGA TGGCCAGCCG ATTCCGATTA TTCTGGATCC CGTGATGGTG
GCCTCCTGCG GCGATGCCTT GACTGGCGAA TCTGCTGTTC AGGCCTCCGC CCAGACCAAA
ACTAAGCCCA AAACTAAACT CAAAACTAAG CCCAAAACTG AGCTTAAAAC TGAGCCCAAG
CACCTTGCCG GGTTGGATTT CACCCCCTTC GCTAAGCTGC TTACTCTTGT GACGCCGAAC
GCCAGCGAGT TTGGCAAGTT GGTGGGAAGC GAGGCGTCAT CAAGTGATGA GATGCTAGCT
CAGGCAAGTG CACTCTCAAG GCGCTTAGTC TGCAATCTGC TGATCACTGG CGGTGACAAG
GGCTCACTCT GGTATAGCGA TAAGGCGGAA GATCTCTTTA TCTGCAACGC GGTGGCGCAT
ACCTCACCGC TACATCAGCA CACTAGCTTT CGCCTGAGCG GCGAGCGGGT GGATAACCCC
AATCACCACG GTAGCGGCTG CACCTTGTCA TCGGCGATTG CCAGTTTTCT GGCTCAGGGC
TTGGTGCTAC ACGACGCCAT CTTGCTCGCT AAAACCTATG TGGGCCAAGG GATAGCGCCG
GCCAAGGCCT TGGGCGCCGG CGCCGGGCCT TTAGCCCGCT GCGGTTGGCC TTCTGGCCTG
GTATCGCTTC CCCGTATCAC AGAGTTGGCT GGCATCACTT CGATTAGCTC TTCAGATCGC
GCTTCAAGTG GCTCCTCGAT ATTGAGTTTT CCAAGGCTTA GTTTCCCGGG GCTTAGTTTT
CCAAGGCTTA AGCGTCCCAT CGGGGTGTAT CCCGTAGTGG ATAACCTGAT GCACCTGGAG
CAGGTGCTGG CCGCCGGTGC CACCACGGCC CAGCTGAGGA TCAAGCTGGA GGATGATCGC
CAAGCAGCTA GCAAACAAGA AGAGGGCGCA GGTGCTGCCG CGTTAGAAGC GCAGATCCAA
GCGGCAATCG CGCTGGGGCG CAAATATGAT GCGCAGGTGT TTATCAACGA TCACTGGCAG
CTGGCGTTAA AGCATGGCGC CTTCGGTATC CATCTTGGGC AGGAAGATCT TTTTGAGGCG
GATCTCGATA GGATAGCCAA GGCGGGGATC GCCCTTGGCG TCTCCAGCCA TGGCGTGTTC
GAGTTGGCGC TGGCCAGTCA GCTTAATCCA TCCTATCTGG CGCTGGGGCA TATCTTCCCC
ACACCGACGA AATCTATGCC TTCTAATCCT CAGGGGTTGA GTAGGCTCGC GCGTATGGTC
GCGCTTTGGA CGCCCGATTG TCCCAGAGTG GCCATCGGCG GCATAGACGC TTCGCGTTTA
GAGCAGGTTA AAGCAACAAA CGTTGAGGCG GTGGCCGTGG TGCGCGCTGT GACCCAGGCG
GATTCGCCGG GCGAGGCCTA TAAACAGCTG GCTAGAATGT GGGAGAACGC CTATGTCACT
CAATGA
|
|---|
| Protein sequence | MSAEKPIVWT IAGSDSGGGA GIQADLATMA DLDCHGCSVI TCVTAQNSVA VNGVEPVSEA
ILLAQLDTLL VDLPPRAIKI GLLANQRQIN LVADWLATHM APLKTDDGQP IPIILDPVMV
ASCGDALTGE SAVQASAQTK TKPKTKLKTK PKTELKTEPK HLAGLDFTPF AKLLTLVTPN
ASEFGKLVGS EASSSDEMLA QASALSRRLV CNLLITGGDK GSLWYSDKAE DLFICNAVAH
TSPLHQHTSF RLSGERVDNP NHHGSGCTLS SAIASFLAQG LVLHDAILLA KTYVGQGIAP
AKALGAGAGP LARCGWPSGL VSLPRITELA GITSISSSDR ASSGSSILSF PRLSFPGLSF
PRLKRPIGVY PVVDNLMHLE QVLAAGATTA QLRIKLEDDR QAASKQEEGA GAAALEAQIQ
AAIALGRKYD AQVFINDHWQ LALKHGAFGI HLGQEDLFEA DLDRIAKAGI ALGVSSHGVF
ELALASQLNP SYLALGHIFP TPTKSMPSNP QGLSRLARMV ALWTPDCPRV AIGGIDASRL
EQVKATNVEA VAVVRAVTQA DSPGEAYKQL ARMWENAYVT Q
|
|---|
| |