| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2085 |
|---|
| Symbol | |
|---|
| ID | 4923621 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2411729 |
|---|
| End bp | 2412685 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640163667 |
|---|
| Product | alpha-L-glutamate ligase-like protein |
|---|
| Protein accession | YP_001094210 |
|---|
| Protein GI | 127513013 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0189] Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) |
|---|
| TIGRFAM ID | [TIGR02291] alpha-L-glutamate ligase-related protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.944791 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGTTTG CAAAGCCCCG AAAGCTGAAG GAAAACGGCG TACTTGGCAT GAACAAGCGC
AACATCGACT ACATAGGTCG CTATAACCCG CGCAAGTTCT ACAAGCGAGT GGATGACAAG
CTCACCACCA AGCAGTTGGC CCTGGCGAAC GATATCGCCG TGCCGGCGCT TATCGGCACC
GTCTGTCAGC AACATGAGAT CATGCACATT CCCGAGATGG TCAACAACCG TGACGGTTTC
GTGATCAAGC CGTCGCAGGG CTCGGGCGGT AAAGGGATCT TGGTGATCAC TAAAGTGGAA
AATGGCCACT ATTTCAAGCC TAACGGTCAC GAGGTGACCC CAAGCGAGAT CGACCGCCAT
ATCTCTAACA TCTTGAGCGG CCTCTTCTCC CTGGGCGGCA AGCCAGATGT GGCCATCGTT
GAGGGACTCA TCGAATTCGA CCCCGTATTC GACGGCTACT CTTTCGAAGG GGTGCCCGAC
ATTCGTTTGA TCGTTTTCAA GGGCTTCCCT GTAATGGGCA TGCTCAGGCT ATCCACTGCA
GCGTCCGACG GTAAGGCTAA CCTGCACCAA GGCGCCGTAG GTGTCGGCCT GGATATCGGC
ACAGGCCGTG GCCTGCATGC GGTGCAGTTT GACCGTCCGC TCGACCTACA TCCGGATACC
GACAAGAAGC TCACCGAGAT CCAGGTGCCC CACTGGGACA CGCTTCTGCA TACGGCCTCT
AAGGCCTATG AGATGAGTGA GCTGGGTTAT CTGGGTACCG ACATGGTGCT GGATCAGAAG
CTTGGTCCTC TGCTGCTTGA GCTCAACGCC CGTCCGGGTC TGGCGATTCA AATCGCCAAC
GGCCAGGGCC TGCTGCCGAG GCTCAAACAT GTGGAGCAGA TGAAGAACAA ATCTATGTCA
GTGGAAGAGC GCGTCGCCTA TGCTAAAACG CATTTTAGCA GTCTCCCTAG CGCTTAA
|
|---|
| Protein sequence | MLFAKPRKLK ENGVLGMNKR NIDYIGRYNP RKFYKRVDDK LTTKQLALAN DIAVPALIGT
VCQQHEIMHI PEMVNNRDGF VIKPSQGSGG KGILVITKVE NGHYFKPNGH EVTPSEIDRH
ISNILSGLFS LGGKPDVAIV EGLIEFDPVF DGYSFEGVPD IRLIVFKGFP VMGMLRLSTA
ASDGKANLHQ GAVGVGLDIG TGRGLHAVQF DRPLDLHPDT DKKLTEIQVP HWDTLLHTAS
KAYEMSELGY LGTDMVLDQK LGPLLLELNA RPGLAIQIAN GQGLLPRLKH VEQMKNKSMS
VEERVAYAKT HFSSLPSA
|
|---|
| |