| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2022 |
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| Symbol | |
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| ID | 4923861 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2334482 |
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| End bp | 2335813 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640163595 |
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| Product | recombination factor protein RarA |
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| Protein accession | YP_001094147 |
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| Protein GI | 127512950 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2256] ATPase related to the helicase subunit of the Holliday junction resolvase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000134258 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000234257 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGTCTAGCT TAAGTTTCGA TTTCGCGCCA GACTTCCGCC CGCTTGCCGC AAGAATGCGG
CCGGAAACCC TGTCGCAATA TATAGGGCAA GATCATCTGT TAGGTGAGGG TAAGCCGCTG
CGTCAGGCCC TCGAGGCCGG CAGGGCTCAC TCCATGATGT TCTGGGGACC GCCGGGTACC
GGCAAGACCA CACTCGCCGA GTTGGTTGCC CATTATGCCA ATGCTCATGT CGAGCGCATC
TCTGCGGTCA CCTCAGGGGT GAAAGAGATC CGCGCCGCCA TCGAGCACGC CAAGAGTGTG
GCCCAGTCAC GCGGGCAGCG CACCTTGCTG TTTGTCGATG AGGTGCACAG GTTCAACAAG
AGCCAGCAAG ATGCCTTCTT GCCCTTTATC GAAGATGGCA CTGTGATTTT TATCGGTGCC
ACCACGGAAA ACCCCTCGTT TGAGATCAAT AACGCATTGT TATCCCGCGC CAGGGTCTAC
CTGATCAAGC GGTTGCAAGA TGAGGAGATC ATCAAGATAG TCCGTCAGGC GCTGGAAGAT
GGGGAGCGTG GTCTGGGTAA GCGTCAGCTT AAGATGCCTA ATGAAGTGGC GGGCAAACTC
GCTAGCCTCT GTGATGGTGA TGCCCGTAAG GCTCTTAATC TTATCGAATT GATGAGCGAC
ATGCTGCCGG ATGGCGGCGA GTTTAATGCT CAGATGCTCA TCGAGGTGGC CGGGCAACAG
CTCGCCGGAT TCGATAAGAA TGGCGATCAA TATTACGACC TTATCTCTGC GGTGCATAAG
TCGATTCGGG GCTCGGCGCC GGATGCGGCG CTTTACTGGT ATTGCCGCAT GCTCGAAGGG
GGCTGCGATC CCTTATATGT CGCCCGTCGC CTGCTGGCCA TCGCCTCGGA AGATATAGGT
AATGCCGATC CTGTGGCCAT GTCGGTGGCG GTCAATGCCT GGGAGTGCTT TCATCGCGTG
GGACCGGCCG AAGGGGAGCG GGCAATTGCC CAGGCAGTTG TCTACCTCGC CTGCGCGCCC
AAGAGTAACG CCGTCTATAC CGCCTTCAAG GCGGCGCGCC AGCTGGCGCG GGAGACCGGC
AGTCAGCCCG TGCCTAATCA TCTGCGCAAT GCCCCAACTC AGTTGATGGC CGATATCGGC
CTGGGTGAGG GGTATCGCTA CGCCCATGAT GAGCCCAATC ATTATGCCAG CGGTGAGTGT
TATTTCCCTG AGCAGCTAGC AGGCACACAG TTCTACTATC CTAGCGAGCA TGGTTTCGAG
AAGCGCATCA AGACCAAGCT AGCCACCTTG GCCGAAATGG ACAGGGCAAG TGAGGTGAAA
CGCTATGAAT AA
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| Protein sequence | MSSLSFDFAP DFRPLAARMR PETLSQYIGQ DHLLGEGKPL RQALEAGRAH SMMFWGPPGT
GKTTLAELVA HYANAHVERI SAVTSGVKEI RAAIEHAKSV AQSRGQRTLL FVDEVHRFNK
SQQDAFLPFI EDGTVIFIGA TTENPSFEIN NALLSRARVY LIKRLQDEEI IKIVRQALED
GERGLGKRQL KMPNEVAGKL ASLCDGDARK ALNLIELMSD MLPDGGEFNA QMLIEVAGQQ
LAGFDKNGDQ YYDLISAVHK SIRGSAPDAA LYWYCRMLEG GCDPLYVARR LLAIASEDIG
NADPVAMSVA VNAWECFHRV GPAEGERAIA QAVVYLACAP KSNAVYTAFK AARQLARETG
SQPVPNHLRN APTQLMADIG LGEGYRYAHD EPNHYASGEC YFPEQLAGTQ FYYPSEHGFE
KRIKTKLATL AEMDRASEVK RYE
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