| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2010 |
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| Symbol | |
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| ID | 4924261 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2323065 |
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| End bp | 2324252 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163582 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001094135 |
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| Protein GI | 127512938 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.397997 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.117138 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCTACCG TAAAACAGTT CGTATTGCCC ATCGCCGTGC TAGTGCTCGG GGGCGGCACC
TTTGCCGTGC TAGCATCGAT GAAAAAACCA CCAGAAGAGA AACCTGTCGT TGACAATACG
CCCGTCGTGG CCGTCGAGAT AATTGACAAG GAGCCCATGA CCTTTACCGT AAACTCCTAC
GGTATCGTCA ACGCCAAGTA TGAAACTGAC CTTGTATCTC AAGTCACCGG CGAGATCGTC
TACTTGAGCG ATGCTTTCGT TCGCGGCGGC TTCGTGAAGA AAGGCCAGAT ACTGGCAAAG
ATAGATCCTA GCGATTACGA GGCCGCCCTT ATCGATGCCA AGGCGACAGT GGCCAGTGCA
AAGGCGACTC TGGTACAAGA AAAAGCCTAT GGCAAGGTGG CCGCCGAAGA GTGGAAGCGA
ATCGAAAACG GCACCCCTAC CGAGCTCAGC CTACGTAAAC CCCAGCTGGC TCAAGAAGTT
GCCCGCCTCA ACTCATCTGA AGCGGGCCTC AAGCGCGCAA CCCGTAATCT CGAGCGCACT
GTAATTAAGG CGCCATATGA TGCCTTGATC GAGAGCCGTC ATATAGGTTT GGGCTCATAC
GTCTCCGCCG GTACCCAAGT GGGTAAGCTG CTTAGCACAG AAAAAGCCGA GATCCGCCTT
CCCCTCCCCG ATAAGGAGAT ACGTTATCTT GACAACAAGG GCCTGGGTGC TCAGGTGATG
GTCAAGGGTA ACTTCGCCGG TGAGAACACC TCCTGGAAAG GTCAAATAGT GCGCAGCGAA
GGCGTTATCG ACAATCGTAG CCGCATGACC TATCTGGTGG CCGAAGTGAT CGATCCCTAT
GGGCTGAAGG ACAACAAGCA GCCGCTGAGA TATGGCAGCT ATATTACGGC GCAGATCCAC
GGCTCACAGG CCCAGGATGT CACCACCATC GCCAGACACC TGGTAGTTAA CGACAAGGTC
GCCATCATGA CGCCGGAAAA CACCCTGGCA TTTAAGTCGG TAGATATACT GCGTCAGCAA
GGTACCCAGG TAGTGATCGG TGACGGGTTA GATGATGGCA TGCGCCTCAT CACCTCGGCG
CTAGATTATC CCATCGAAGG GATGAAACTT GCCCTGGCCG AAGACAAGCA GACCCCGGGA
CAAGATGAAG CCGTCGCCGA TCAACTGGCC ATGGAAGACA AGGAGTAA
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| Protein sequence | MATVKQFVLP IAVLVLGGGT FAVLASMKKP PEEKPVVDNT PVVAVEIIDK EPMTFTVNSY
GIVNAKYETD LVSQVTGEIV YLSDAFVRGG FVKKGQILAK IDPSDYEAAL IDAKATVASA
KATLVQEKAY GKVAAEEWKR IENGTPTELS LRKPQLAQEV ARLNSSEAGL KRATRNLERT
VIKAPYDALI ESRHIGLGSY VSAGTQVGKL LSTEKAEIRL PLPDKEIRYL DNKGLGAQVM
VKGNFAGENT SWKGQIVRSE GVIDNRSRMT YLVAEVIDPY GLKDNKQPLR YGSYITAQIH
GSQAQDVTTI ARHLVVNDKV AIMTPENTLA FKSVDILRQQ GTQVVIGDGL DDGMRLITSA
LDYPIEGMKL ALAEDKQTPG QDEAVADQLA MEDKE
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