| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2009 |
|---|
| Symbol | |
|---|
| ID | 4924260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2321387 |
|---|
| End bp | 2322466 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640163581 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001094134 |
|---|
| Protein GI | 127512937 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.741438 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.129044 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAATATTG AGCAACTGCT TTGCGAAACA CTCTCATGCG AAAAAGTCAT AAAGCTGGGT
AAACTGCAGA CCCTTTGGAG TGGCTATGGC GAGATAGCCC GCTTTATGGT GCATTACCTG
CCTGAAGGAC CGTATGACAG CTCCCGTGAT GATTTAATTA ACAGGCCTGC TTCGCAAACT
GTCATCGTTA AGCATATCGC GCCGCCAACA CAGAGCTGTC ATCCCCACCA ATGGGACACA
GAAGTCTCTC ATCAACGCAA GATGCGCTCT TATCAGGTAG AGCTCAATTG GTATCGTGAC
TTCGCTCGCC GTTGCCAGGA AGTGCTTAAC CTCCCCCAAC TTCTAGCGGC AGATCAAGAT
ACTGAGACCC AAGAGATGTT GCTCGTCATG AGCGATCTTG ACGCTCAGGG GTTCGATCAG
CGCCGCATCA ACCTGACCCA GGCCGAGCTT TACGCCTGCA TAGAATGGCT GGCCCGTTTT
CATGCAATGT TTGCCTATGA AGCTTTTCCG AAAGAAGATG CGCTGGATGA TGCTTCCTAC
GATGGCCTTT GGCCAATCGG CACCTACTGG CACCTGGCAA CCCGGCCCGA TGAGCTTGAA
GTTATGACAG ATTCGCCTTT GAAAAATGCC ACAGAGGCGA TCGACGCTAG GCTTAATCAA
GCCAGGTTTC AAACCTTAGT ACATGGCGAT GCTAAGGTCG CCAACTTCTG CTTTCACAAA
GAGGTTGAAA GCTTAGGCGT TAACGGTGTG GCGGCGGTAG ATTTTCAATA TGTCGGTGCC
GGCATTGGCG TAAAAGACTT TATCTATCTG CTGGGCAGCT GCCTGGATGA GGCTCAGTTG
GTGACTATTT ATGACGCTGC CTGTAGCCAC TATTTTAAGT CCCTTAAACA GCAGCTTTCT
GGTCGTTGGG CGGCTGAGCA AATTGAGGCT TTGGTAGCGG AGTGGAGTGA CCTACTTCCC
TTCGCCTGGG CCGACTTTGA GCGCTTTCTT GCTGGCTGGC AGCCTCAGCA TCATAAGCGC
AATGGCTTTA GCCAAGATAT GACTCAGAGA GTGCTAAAGG CGCTCGGCTC AGTGCGATAG
|
|---|
| Protein sequence | MNIEQLLCET LSCEKVIKLG KLQTLWSGYG EIARFMVHYL PEGPYDSSRD DLINRPASQT
VIVKHIAPPT QSCHPHQWDT EVSHQRKMRS YQVELNWYRD FARRCQEVLN LPQLLAADQD
TETQEMLLVM SDLDAQGFDQ RRINLTQAEL YACIEWLARF HAMFAYEAFP KEDALDDASY
DGLWPIGTYW HLATRPDELE VMTDSPLKNA TEAIDARLNQ ARFQTLVHGD AKVANFCFHK
EVESLGVNGV AAVDFQYVGA GIGVKDFIYL LGSCLDEAQL VTIYDAACSH YFKSLKQQLS
GRWAAEQIEA LVAEWSDLLP FAWADFERFL AGWQPQHHKR NGFSQDMTQR VLKALGSVR
|
|---|
| |