| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2005 |
|---|
| Symbol | |
|---|
| ID | 4924256 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2317214 |
|---|
| End bp | 2318545 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640163577 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001094130 |
|---|
| Protein GI | 127512933 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.343798 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.360324 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTACG ATCCTTTACT CAATGACTTT CCCGATGGTC AGCCCTGGCC AGACTCATAC
TGGGCGACGA CCGTCTCTCG TCCTGCACGC TTGCCAGCTC TCAGCGGCCG GATGCAAACC
GATGTTGCCA TCGTCGGTGG AGGCTTTACT GGTTTGCTGA CTGCCTATTA CCTTGCCAGC
GAGTTTAATA TTGAGGCCAG GGTGTTAGAG GCAAATCAGA TAGGCTTTGG CGCCAGCGGC
CGCAATGCCG GTTTCGTACT CAAAGGCTCT GGACGCATGG GTTATAGTCA GATGGCCAAG
AAGTGGGGCA TGGAGACCAC CAAAGGGATC TATGGTGAGT TCACGAGCGC GGTGCGCCGC
GTCGAGCAGT TGATTGAACA GCATGAGATT GCCTGCGATG CTCAGCCCAA GGGCTATCTG
AAGATAGCGC ACAACGCCAA GGCCTATAGC ACATTAAAGG GAGCGGCCGA CTTCATCGCC
GAACATCTTG GCGACGACGC CCAGTTTCTC ACACCCAGTG AGCTTAAAGA GAGCTACATG
GATAACCATC AAGCCTATGG CGCGCTGCGC CTTAACGATG GTTTCGGTGT AAACCCCCTA
AAACTCTGCT TGGGCTATAA GCGCGTGGTG CAATCCCTTG GCGTACACCT GCATGAAGAG
AGCTGTGTGC GAGAGTGGTT AAAGGAGGGA CCTCACCACA GACTCATAAC CGATAAGGGA
GAACTGATCG CTAAGCAGGT TGTCAGTGCC GGTAACGCCT ATACGCCTAA ACGTTTTAAT
CAAGCGGTTG ATAATCGCTA CCTGCCCATA CTGAGCAACA TCATAGTAAC GGCACCTCTC
ACTGATGCGC AGCTTGAGGC GACAGGCCTT AAGACGCATC AGGTGGTGAT GGATACCCGT
AGGCTCAAGT ACTACTATCG CCTGCTTAGC GACAATCGCT TACTGTTTGG TGGCCGCGGC
GCAATAAGCG GCGCCGATGC CGGCGATCCC CGTTATGGCG AGCGTTTAAA GAGTGCTATG
GCAGATTGCT TCCCGGCGCT TGCCGAAGTA ACAGTTGATC ATAACTGGAC CGGATGGATC
GCTGCCGCCT TAGATGATAT GCCCCACGTC TTTAGTCAGG GAAATATGGG TTATAGCCTG
GGCTATTGCG GCTCAGGTGT TGCATTTTCT GCTCAGGCCG CCTATCGCCT GGCACAGCAT
ATTGCCGGCG AGCGCTTGCC TGAGCTGCCG CTTTATCAAT CACCACTGCC TAAGTTTCAC
TTCGCGCGAC TGCGACGCTT AGGACAAAGT GCCTATTATC AATATGCTTG GCTCAGGGAC
AGGTACAGTT AG
|
|---|
| Protein sequence | MSYDPLLNDF PDGQPWPDSY WATTVSRPAR LPALSGRMQT DVAIVGGGFT GLLTAYYLAS
EFNIEARVLE ANQIGFGASG RNAGFVLKGS GRMGYSQMAK KWGMETTKGI YGEFTSAVRR
VEQLIEQHEI ACDAQPKGYL KIAHNAKAYS TLKGAADFIA EHLGDDAQFL TPSELKESYM
DNHQAYGALR LNDGFGVNPL KLCLGYKRVV QSLGVHLHEE SCVREWLKEG PHHRLITDKG
ELIAKQVVSA GNAYTPKRFN QAVDNRYLPI LSNIIVTAPL TDAQLEATGL KTHQVVMDTR
RLKYYYRLLS DNRLLFGGRG AISGADAGDP RYGERLKSAM ADCFPALAEV TVDHNWTGWI
AAALDDMPHV FSQGNMGYSL GYCGSGVAFS AQAAYRLAQH IAGERLPELP LYQSPLPKFH
FARLRRLGQS AYYQYAWLRD RYS
|
|---|
| |