| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1990 |
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| Symbol | |
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| ID | 4920954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2301556 |
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| End bp | 2303979 |
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| Gene Length | 2424 bp |
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| Protein Length | 807 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163559 |
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| Product | heavy metal translocating P-type ATPase |
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| Protein accession | YP_001094115 |
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| Protein GI | 127512918 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2217] Cation transport ATPase |
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| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGCGT TAAACTGCTT TCATTGCGGC GAGCCGGTAA CCACCGGCCG CCAATTCGAG
ACCCTTATCG ACAATGTCCC TCAGCCCATG TGTTGCCCCG GATGCCAGGC GGTATCTGCC
GCCATCATAG AGGCGGGACT GACCAACTAT TATAAGTATC GCACCGAGCC CGGCAGCAAG
CAGACGGCGC TGGTGCCCGA AGCCCTTAAC GCCTTTTCCG CCTTCGATCT TAAAGAGGTG
CAGCAGGACT TTGTGCATCA AGACGTGCAT AAAGACAAAC AGAGTGCCAG CACCTCTCTA
ACCATAGATG GCATTACCTG CGCGGCCTGC GCCTGGTTGA TCGAACATAA GCTTCAGCAT
CTCGACGGCA TCAACAAGAT AGCAGTCAAC ACCACCACAG AGCGGGCTCA GGTCAGCTGG
AATCCGGAAA AACTCAAACT GTCAGAGATC CTGGCACAGA TCAGCCGTAT CGGCTATCAA
GCCGCTCCCT ATCAGGTGGA TGACGAAGAG ATACAGAGCA AGAAGAACAG TCGTAAGTTC
CTGCTCAGAC TCGGCCTGGC AGGCTTTGCG ACCATGCAGG TGATGATGTT TGCCCTGGCG
CTCTACTCTG ATTACTTTAC CGATCTCGAC GTGGAGTTCA GGGACTATTT TCGCTGGGTC
AGCATGATCT TCGCCGCGCC CGTGGTCTTC TATTCGGCGC AGCCCTTCTA TTTTAGCGCC
GTGCGCGCCA TGTTATCCGG CCGGCTCAAC ATGGACGTGT CTGTGTCCAT CGCCATCTGC
GGCGCCTATA TCGCCAGCTG TATCGCTACG GTATCTGGCC AGGGCGAAGT CTATTTCGAA
TCCGTCAGCA TGTTTACCTT CTTCCTGCTG CTGGGACGCT ATTTCGAGCA AAATGCGCGG
CAGAAGGCCT CGATTAGCTC CAATAACCTG CACAAATTGA TCCCGCTCAC CGCCAACTTG
CTCGATAAAG ATGGCATCCA GACCGAAGTC CCCGCTAAGC GTCTCAAGGT TGGTGACCTC
ATTATGGTTA AGCCCGGTGA GGTGATCGCC GCCGATGGCG ATATCATCGA GGGGATGAGC
AGCGTCAATG AGGCCATGCT TACTGGCGAG CAGATGCCGG TGACCAAGAA TATCACCAGC
CAGGTGTATG CGGGCACCAT CAACGTGGAT CACCCGATAA AGGTGCAAGT CACCGCGACC
GGGCAAGACC AATTGGTCGC CGAAATCATT CGCCTGCAAG AGGCGGCATC GAACAACAAG
CCAAAGGTGG CGCTCTACGT CGATACTATC TCCAACTATT TCACCTGGAC CATCTTAGTG
GTTGCCGCCC TCACCTATCT GGTATGGAAG CACTATTGGC CGGATGATGC CTTTTGGGTC
ACGCTTTCCG TCTTGGTCGC TACCTGCCCC TGCGCGCTGG CATTGGCGAC ACCGACTGCG
GTGACCTGCG CTACCGGCCT CTTTACCAGG CTTGGGGTGG TTGCTCGCCG CTCGGGTGTG
TTTGAGAAAC TACCCAAAGT CGATCAGGTG GTGTTTGATA AGACGGGCAC TCTCACCTGC
GGCAGCCTCA CTCTGCGCGA GACTAAGAAA TTTACTCAGC GTTTTAACCA AGATGCCTCT
CTCGATGTGC TGGCCATCGC CGCCGCCATG GAGTCGCATT CGATTCATCC CATCGCTAAA
GCGTTTGCGC CTTACTACCA GACTGGCTAT CGCTTGGATG AGAGTCAGTA TGTAGCAGGT
GCGGGCGTGC AGGCTAAGGT CAATGGCACC CGCTATTTCC TCGGCAGCGC GGATTTTATT
CGCCAAAACA CAAGTCTTAC CGCTATCGAC GGCCAATGCA GCGTCTATCT TGCCGATAAC
GACGCGCTAC TCGCCGGCTT TACCTTGAGC GATACGGTGC GAGAAGATGC TAAGGCAACT
CTGGTAACCC TCAAGGAGAT GGGCTTTGCT ACCTGTATCG CCAGTGGTGA CACCAGTGAA
CACGTAGAGC AAGTTGCCAA AGAAGTGGGC ATAGAAAACT TGCACAAAGG TCTCAAGCCC
CAAGATAAAC TTAAACTTAT CAATCAGCTA AAAGATGAGG GCAAGCAGGT TGTCATGTTC
GGCGATGGTG TAAACGATGC GCCAGTTCTG GCAGGTGCCA ATCTGTCGGT GGCCATGGGC
AGCGGCGCGG ACATCGCCAA AAACAGCGCC GATCTTATCC TGCTCGGCGA TCAGCTATCC
CGCTTTCCTC AGGCGGTTCG CATCGCCAAG ATGACCGAGC AGATCATCAG ACAAAACCTG
ATCTGGGCGC TTGGCTATAA CCTGCTTATC ATTCCTTTGG CGGTAACTGG ACACGTGTTA
CCCTACATTG CTGCCATAGG TATGTCGGCC AGCTCATTAA TTGTTGTCGC CAATAGCCTC
AGACTACTAA AGGTTCGTTT ATGA
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| Protein sequence | MDALNCFHCG EPVTTGRQFE TLIDNVPQPM CCPGCQAVSA AIIEAGLTNY YKYRTEPGSK
QTALVPEALN AFSAFDLKEV QQDFVHQDVH KDKQSASTSL TIDGITCAAC AWLIEHKLQH
LDGINKIAVN TTTERAQVSW NPEKLKLSEI LAQISRIGYQ AAPYQVDDEE IQSKKNSRKF
LLRLGLAGFA TMQVMMFALA LYSDYFTDLD VEFRDYFRWV SMIFAAPVVF YSAQPFYFSA
VRAMLSGRLN MDVSVSIAIC GAYIASCIAT VSGQGEVYFE SVSMFTFFLL LGRYFEQNAR
QKASISSNNL HKLIPLTANL LDKDGIQTEV PAKRLKVGDL IMVKPGEVIA ADGDIIEGMS
SVNEAMLTGE QMPVTKNITS QVYAGTINVD HPIKVQVTAT GQDQLVAEII RLQEAASNNK
PKVALYVDTI SNYFTWTILV VAALTYLVWK HYWPDDAFWV TLSVLVATCP CALALATPTA
VTCATGLFTR LGVVARRSGV FEKLPKVDQV VFDKTGTLTC GSLTLRETKK FTQRFNQDAS
LDVLAIAAAM ESHSIHPIAK AFAPYYQTGY RLDESQYVAG AGVQAKVNGT RYFLGSADFI
RQNTSLTAID GQCSVYLADN DALLAGFTLS DTVREDAKAT LVTLKEMGFA TCIASGDTSE
HVEQVAKEVG IENLHKGLKP QDKLKLINQL KDEGKQVVMF GDGVNDAPVL AGANLSVAMG
SGADIAKNSA DLILLGDQLS RFPQAVRIAK MTEQIIRQNL IWALGYNLLI IPLAVTGHVL
PYIAAIGMSA SSLIVVANSL RLLKVRL
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