| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1982 |
|---|
| Symbol | |
|---|
| ID | 4921010 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2293640 |
|---|
| End bp | 2294911 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640163551 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001094107 |
|---|
| Protein GI | 127512910 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0235719 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCACGCCT TACCTCTATT TGAATCGATT GACTATATCG AAGCCGGCAA CCCCATCATC
AATCAGCACA TTACGGCGAT AGCCATGAAT AGCGTCGAAG ATGCAGGCTT GGTTTATGAG
CTGGCATCCG ATCTACTGTT CGCCCAGCGA GAAAATGAGA ACAGTTATAA GAGTTTTCGT
AGTGAAATCA CCTGTTTTCT AAATTGGTGT TTCGATGTGG TGCAGCAGTC GCCGGGGCAA
ATAAGTCGGC GTGACATGGA TAAATTCGTG GCCTACTGTC AGTCGCCACC AAAGGAATTA
ATCGGTCAGT TTAATGTTGC CCAGTTTAAA CTCGACAAGG CGAGTCAGCA GCGCGTGCCC
AATCCGTTAT GGCGACCCTT TGTGGGAAAA CGAGGGGAAG AATACCGCCT TAGCGATAAC
GCCCTCAAGA CTAAGATGGC GATACTCTCC TCATTCTATG GCTTCTTGAT GGCGGAAGAT
TACTGTGAGC GCAATCCAGC TCAGGCCTGG ATGAACCATT CAAAGTTTGC CCATAAACGA
AAGTTTGCCA TGAGCGAAGA GGAGGGCAGT GGACTCGCCT TTACCGAATT GCAATGGTCT
TATGTTATCT CAAGTGTCGA ACAACTTGCC ATCGCGGAAC CTCAAATCCA TCAACGCAGT
TTGTTCCTTA TCAAGTTGAT TTACGGTTGT TATTTGCGTG TCTCTGATGT GAGTGCGCGG
AGTGGTTACA GCCCTATCAT GGGACAATTT AAGCAAGACA AGCAGACAGG GATCTGGCGT
TTTCATATTC CTAAGAGTAA AGGGGGCAAG CAGCGACAAA TCCCATTGTC TAATGCATTA
ATAGAGGCAC TCAAAAAGTA CCGCGAACAT TTGGGGCTGT CACCTTTACC CGGCTATCAG
GAACAGACGC CAATTTTCGT GCGCCATAGG GCCGCTGGGC GAGGACGTGA AGCGGGATTG
GTCGACGCAA ATCTGGGCAT TCGCCAGGTA AGAGAGGCGG TGCAGTCGCT GATTAATCAC
GCCGCTGACC AGGCTGCCAC GGATGGGCTT TTGGAAGATG CAGAGGTGAT GCGAAAACTG
ACAGTGCATA GCATCCGTCA TACCGGGATC ACCCATGACA TTAATCTCAA TGGTCGGCCC
TTATCTCATG TTCAGGCGGA CGCAGGGCAT GAGAGCATTG ATACCACGTC TCAGTATCTG
CACACATCTC AGGCCGAAAG GCATCAGAGT GCAGCTAATA AGCCTATGGA CAGATTAGCC
GGCATAGAAT AA
|
|---|
| Protein sequence | MHALPLFESI DYIEAGNPII NQHITAIAMN SVEDAGLVYE LASDLLFAQR ENENSYKSFR
SEITCFLNWC FDVVQQSPGQ ISRRDMDKFV AYCQSPPKEL IGQFNVAQFK LDKASQQRVP
NPLWRPFVGK RGEEYRLSDN ALKTKMAILS SFYGFLMAED YCERNPAQAW MNHSKFAHKR
KFAMSEEEGS GLAFTELQWS YVISSVEQLA IAEPQIHQRS LFLIKLIYGC YLRVSDVSAR
SGYSPIMGQF KQDKQTGIWR FHIPKSKGGK QRQIPLSNAL IEALKKYREH LGLSPLPGYQ
EQTPIFVRHR AAGRGREAGL VDANLGIRQV REAVQSLINH AADQAATDGL LEDAEVMRKL
TVHSIRHTGI THDINLNGRP LSHVQADAGH ESIDTTSQYL HTSQAERHQS AANKPMDRLA
GIE
|
|---|
| |