| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1959 |
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| Symbol | |
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| ID | 4920992 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2264022 |
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| End bp | 2264837 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163528 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_001094084 |
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| Protein GI | 127512887 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000686084 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00037769 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTCGATT ATCAAGGGAA AAACGTCTTT GTAGTGGGCG GTACCAGTGG CATTAACCTG
GGTATCGCCA AGGCTTTTGC CAAGGCGGGT GCTAACGTTG CCGTGGCCAG CCGACGTCAG
GAAAAGGTTG ATGCGGCCGT AGAGGCGCTG CGCGAGATTA ATGGTCAAGG TAAGATGCTT
GGCGTCGCCT TCGATGTTCG GGATCTAGAG GCGCTTAAGA CTGGTTTTAA GCAGATAGCC
GATGCTTATG GCCAATTGGA TGTGCTGGTC AGTGGCGCGG CCGGAAATTT CCCGGCGACA
GCGGCGGAGC TTTCCGAAAA CGGTTTCAAG TCGGTGATGG ATATCGATCT GCTCGGCAGT
TTTCAGGTGC TCAAGCAGGC CTATCCCTTG ATGCGTCGCC CCGGCGGCGC CATAGTACAG
ATCTCGGCGC CTCAGGCCTA TATCGCCATG CCGATGCAGT CCCATGTAAG CGCGGCCAAG
GCCGGGGTCG ACATGTTGAC CAAGAGTCTG GCACTCGAGT GGGGCATTGA GGGGATCAGG
GTTAACTCTA TAGTGCCCGG TCCCATCAGC GGCACAGAAG GTTTCAGCCG CCTGGCCCCC
AGCGATGCAC TGCAGCAGGC CGTTGCCCAA AGCGTGCCTC TTAAGCGAAA CGGCAGCACG
GATGATATTG CCAACGCGGT GATGTTTATT GCATCAGAAA TGGCCAGTTA CATTACCGGC
ACCGTGTTGC CAGTAGACGG CGGTTGGTCC CTCGGTGGTG CCAGCATGGC CATGAGTCAA
TTAGGCAAAA TGGCCCAACA ACCGAAAGAG AATTAG
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| Protein sequence | MFDYQGKNVF VVGGTSGINL GIAKAFAKAG ANVAVASRRQ EKVDAAVEAL REINGQGKML
GVAFDVRDLE ALKTGFKQIA DAYGQLDVLV SGAAGNFPAT AAELSENGFK SVMDIDLLGS
FQVLKQAYPL MRRPGGAIVQ ISAPQAYIAM PMQSHVSAAK AGVDMLTKSL ALEWGIEGIR
VNSIVPGPIS GTEGFSRLAP SDALQQAVAQ SVPLKRNGST DDIANAVMFI ASEMASYITG
TVLPVDGGWS LGGASMAMSQ LGKMAQQPKE N
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