| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1888 |
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| Symbol | |
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| ID | 4921768 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2175650 |
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| End bp | 2178478 |
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| Gene Length | 2829 bp |
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| Protein Length | 942 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640163456 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_001094013 |
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| Protein GI | 127512816 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTCAAT TTAAACCTAA CCTACTCACG CTAGCCCTGC TCTCGGCCGG CGTTTGTATT
AATGTCTATG CAGCTGATAA CGAGGCAGCG AAGGCTGAAG CGGCAGCAAC GACTCAAGAC
GAGTCAATTG AAGTAATCGA GGTACGTGGC TTCCGTACCA GTGTGATCAA GTCGCTCAAC
AACAAGCGTT TTGCCGATAC CGTATCAGAA ACCATTTCTG CAGATGACTT AGGCGCCCTG
CCTGATCAAT CAATTGCCGA TGCCCTAACC CGCCTGCCAG GTGTTACCGC CGTACGTACC
GGTGGCCAAG CAAGTGGTCT TAACATTCGT GGTCTGGACG GTGATTTCGT TGCCGCAACA
TTAAACGGCC GCGAGCAGGT TACCACTGGT GGTAAACGTG CGATCGAATT CGATCAATAC
CCTTCTGAGC TGATCAACCA GGCGCAAGTT TATAAGTCGC CAAAGGCTTC TCTCATCGAA
GGTGGTGTTG CCGGCACAGT CGAGCTTAAA ACAGCTGACC CGCTGCAGGC ACCAAAAGAC
CACAACTTTA CCGTTAACGC TCGTGGTAGC TTTAACGACC GCGCCGGTGA AATTGCCGAC
GCAGAAGAAT ATGGCAACCG TCTAAGCTTC TCGTACCAAG GTAAGTTCCT CGATGAAACC
CTTGGTGTTG CCGTGGGTTA CGCCCATCTT TATCAACCTT ATGTAGCAAG CCAGTTCATC
GGCCTTCGTT TCAACGACGA CAGACGCGAT GTCAACGGTG ATGGCAATCT TGAGTCCATC
AGCGAAGGCT TCGAGATGCA ACAAAAAGGT GGTACCGACA CCCGTGACGG TTACATGGGC
GCCATCCACT GGCAACCCAA TGACAACTGG AGCTTTAAGG GCGACATCTT CCACTCTAAG
TTCGATTCAG AGAACTTTGC CCGCGGTTTC CGTGTGAAAT CATTAAAGAA CGGTCAGATC
AGTGACGCCA TTGTCGAAGA CGGCTCTATG ATCGGTGGTA CAGTATCTAC CGATGGTACC
GATAACTTTG CCGTTTTTGT GGTTAACGAT AACGACTCAA AATACTCAGA GCTCACCTCT
GGTGCCGTTA ACATCGAATG GACCAACGGT GAAAACCTCA CCATCGCCGC AGACATCAGC
TACTCTTCTG CCGACGGTGA ATTCGTCAAC GGCGGTACCC GCGCCGTTAT CTATGACGAC
ATGGCTAACA ATGTTAGATC GGCCGAGTCG ATCACTTATA AACTAAACAA CCTCAATCCA
GCCGACATCA GTTTCGCCAA GGATTACACA GATACTTCGA CCCTAGGTCT GAGAGAAGTG
GGTATGTGGC CTTATGATCA ACAAAACGAT CTGATCGCCT ACAAACTCGA CCTAAACTAC
CAGTTAGACA ATAGCTTCGT GTCGTCTATC GACGTCGGCG TAAGATACTC TGAGCGTGAG
TTCAACGCGC AGCGCTCTCA AGCCGGTTAT GGTTTCGAAT TTGGCACCAA CCCAGACAAT
CAACCTGTGC TAGCCCTGAC CGATGATATG ACCCGTGTGG TTAACTTTGG CGGTGAGCTT
TCAGGCTACC CAAGCTTCCT AGCTATCGAC TTTGATAAGG CAGTGGATCT GGTTAACGCA
CAACTGGCGG CAACAGGACA AGATCCTTTC GTCCCTACTG CTAACTGGGC CAACAACTGG
ACCATGATCC AAAGCGGTAC GGTAAATGAA GACGTGCTAG CCGGTTATGT TCAGGCTAAC
CTGGACTTCG AAATTGGTAG CATCCCTGTA ACAGGTAACA TCGGCCTGCG TGTGGTTAAC
ACAGATCAGT CAAGTACAGG TCTACAACAA GTAGGTTTCG GTCTGGGTGA AGAGATCGTC
GATGAAAAAG GCGTGGTCAG CACCGACTAT ATCCACAACA AAGTGGGTAA GTCTTACACC
GACTACCTAC CTTCGGTTAA CTTGAACTTC CACCTGACAC AAAACGATCA GATCCGTTTT
GCCGCAGCAT CGGTTATGGC TCGTCCACCA ATCGACAAGC TTAAGTCTGG TATGGGTTCT
TGGTATGACG ACTCTGCAAC ACCAGGTTAC AAGAAGTACA ACGCATGGGG TAACACCAGT
CCGCTACTGG ATCCTTTCTA TGCCGATCAG TACGACCTGT CATATGAGCA CTACTTTGAA
GAGTCTGAAG GTGCGATCGT CTTTGCCGTG TTCTACAAAG ACATCAAGTC ATTCATCAAC
AACTTCACTA TCCAGCCATT TGACTTCGAA GAAGCAGGCT TCATCGTGCC AGACACTATT
GTCGACAACG GTGTAGAGTT CCCTGTCGTT AAGAATGAAG GCCAGTACCA GACGGCGGTT
AACAACGATA ACGGCGGTTA TATTCGCGGT ATCGAACTTG CCTACACTCA GGTATTCGAC
TTCCTACCGG GCGCACTGAG CGGCCTAGGT TTCACCGGCA GTTACGCATA CTCTGACAGT
GAAGTAGAGT TTGAAACCGA CCTAAGTGGT GAAAGCTTAG CTATCCCGCT GCCAGGCCTG
TCTGAGCACG TATTGAACAC CACCCTGTTC TACACCTTGG ATGGTTTCGA TACCCGTTTG
AGCATGCGTT ATCGTAGTGA GTATGTTTCT GAGCAAGTTG CGGTTGAATC TCAGCTGGCC
TTCTTCGATG CAGAAACCAT TCTCGACTAC CAGGCATCTT ATGCGATGGA CAATGGTCTT
AAGTTCCTGT TCCAGGTTAA TAACCTGACA GATGAAGCTA ACAAGACCTA CTTCGGTCAG
ACGCACCAAA CTGGTACCAT CCAGAGCTTT GGTCGCCAAT ATTTCCTAGG ATTTAGCTAC
ACTATGTAA
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| Protein sequence | MFQFKPNLLT LALLSAGVCI NVYAADNEAA KAEAAATTQD ESIEVIEVRG FRTSVIKSLN
NKRFADTVSE TISADDLGAL PDQSIADALT RLPGVTAVRT GGQASGLNIR GLDGDFVAAT
LNGREQVTTG GKRAIEFDQY PSELINQAQV YKSPKASLIE GGVAGTVELK TADPLQAPKD
HNFTVNARGS FNDRAGEIAD AEEYGNRLSF SYQGKFLDET LGVAVGYAHL YQPYVASQFI
GLRFNDDRRD VNGDGNLESI SEGFEMQQKG GTDTRDGYMG AIHWQPNDNW SFKGDIFHSK
FDSENFARGF RVKSLKNGQI SDAIVEDGSM IGGTVSTDGT DNFAVFVVND NDSKYSELTS
GAVNIEWTNG ENLTIAADIS YSSADGEFVN GGTRAVIYDD MANNVRSAES ITYKLNNLNP
ADISFAKDYT DTSTLGLREV GMWPYDQQND LIAYKLDLNY QLDNSFVSSI DVGVRYSERE
FNAQRSQAGY GFEFGTNPDN QPVLALTDDM TRVVNFGGEL SGYPSFLAID FDKAVDLVNA
QLAATGQDPF VPTANWANNW TMIQSGTVNE DVLAGYVQAN LDFEIGSIPV TGNIGLRVVN
TDQSSTGLQQ VGFGLGEEIV DEKGVVSTDY IHNKVGKSYT DYLPSVNLNF HLTQNDQIRF
AAASVMARPP IDKLKSGMGS WYDDSATPGY KKYNAWGNTS PLLDPFYADQ YDLSYEHYFE
ESEGAIVFAV FYKDIKSFIN NFTIQPFDFE EAGFIVPDTI VDNGVEFPVV KNEGQYQTAV
NNDNGGYIRG IELAYTQVFD FLPGALSGLG FTGSYAYSDS EVEFETDLSG ESLAIPLPGL
SEHVLNTTLF YTLDGFDTRL SMRYRSEYVS EQVAVESQLA FFDAETILDY QASYAMDNGL
KFLFQVNNLT DEANKTYFGQ THQTGTIQSF GRQYFLGFSY TM
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