| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1886 |
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| Symbol | |
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| ID | 4921719 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2171509 |
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| End bp | 2173512 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163454 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_001094011 |
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| Protein GI | 127512814 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAAGG CGCGTCACGA TTTGAATAGG CTCTTGAACA AGCCATTTAA TATTAATTTA
AAACTTCCAT TCAATAAGTT AAGTGCTGCC CTGTGCAGCG CCGCGCTAAT GCTCTCCACC
CAGACCTTCG CCCTGCCCCA GATGGAGGCA GCAACCAATG CAAAAACTGT TAGCGTCCAA
TCAGCTGACG TGCAGTCTAC AAGCAGCGAG CGGGTGACCA AGCCTGTCAT CTATCAGGTG
TTCACCCGCC TCTTTGGCAA TACCCAGACC GCCAACATCC CATGGGGCAC CAAGGCGCAG
AACGGCGTAG GCAAGTTCAG CGACTTTACG CCTAAGGCGC TAGAGAGCAT CAAATCCTTA
GGCGTCAGCC ATATCTGGTA TACGGGGATC CCCCATCATG CCTTGGTCGG CGACTACAGT
CAGTATGGCA TCGGCACTGA TGACCCAGAC GTGGTCAAGG GCCGCGCCGG CTCACCCTAC
GCGGTGAAAG ATTACTATAA CGTCAATCCG GATCTGGCAG ACGATCCCGC CAAACGCCTT
GAGGAGTTCG AAGCGTTGAT CGCCCGCACC CACGAAGCTG GCATGCAAGT GATCATCGAC
ATAGTGCCCA ACCATGTAGC GCGTGGCTAT CATTCGCTGT CGGCCCCGAC AGGCGTCACA
GACTTCGGCG CAAGTGACAA CACCCAGGTC AGTTACGCCA GAAACAACAA CTTCTACTAT
GTAGTGGGCA CGCCTTTCGA GGTGCCAAGC CTAAGCCCAG ATTTAAAGCC CCTCGGCGGC
GAGCCACATC CGCTAGTCGA TGGCAAGTTT GACGAGTTTC CCGCCAAGTG GACCGGCAAT
GGCGCGCGCG CGGCTAAGCC AGATCAAAAC GACTGGTATG AAACCGTTAA GATAAACTAT
GGCGTCACGC CAGATGGAAG CCTAGATTTT CCTCAACTGC CAGAGGGCTA CGGCAAAAAG
TCGGCCGCCG AACATTACGA CTTCTGGCAA CAGGTGCCAA AAGAAAGCAT CCCCAGCTCC
TGGATTAAGT TCAACGAGAT CGCCCAGTAT TGGCTCGCCA AGGGCGTAGA CGGGTTTCGC
TATGACATGG CCGAGATGGT GCCAGTTGCC TTCTGGAGCT ATCTGAACAG CCATATCAAG
CACACCAATC CCGATGCCCT GCTGCTCGCC GAGGTCTATA CCCCGAGTCG CTACCGTGAC
TATATTCACC TTGGCAAGAT GGACTACCTC TATGACAAGG TGGGGCTTTA CGACAGCCTC
AAGGCTATTA TCCAAGGCAA GGCTGGCACC CAGGCGATCG AACGCGATCG CAACAGCGTC
GAAGATATCG CCGAGCATAT GCTGCATTTT CTCGAGAATC ACGATGAGCA GCGCATCGCC
AGCCCTGAGT TTGCCGGAGA TCCCCTAATT GCCCTGCCCG CCATGGTGAT CTCCACCACC
TTAAGCCAGG CGCCCACCCT GCTCTATTTC GGCCAGGAGG TCGGCGAAGA TGGTAGCGAA
GACGCAGGCT TTGGCAAACC CAGCCGCACC AGCATCTTCG ACTATGTTGG CGTGCCGGCC
CACCAGCGCT TTATGAACCT GGGTAAATTC GACGGCGGTC AGTCTTCAAA AGAGGAGCTG
AGTCTGCGAG CCTATTACGC CAAGCTGTTA AACCTCAGCC ATAGCCTGAG TGCCCTAAGC
GGTGAATATG GCGATCTGCA CAGGGCGAAT ATCGATCAAG GCAAGGGCTA TGATGCAGAC
CTATTTGCCT TCAGCCGCTT CGACGACAAG CAAAAGCTCA TCATCGTCAG CAACTTCGCC
AAAGACAAGG CAAAGCACCT CACCCTAGAG CTGCCCCCAG CCTTAGTTAA ACGCTGGCAA
CTCGCACCAG GCACCTACCC GCTTAAAGAG ATGTTGAGTG ATAAAAAACC TGCAGCGCCA
TTGACGCTAA CGACGAAGGG AGGTCAAGTC ACACTAAACC TTGCTCCACT TGAGTCAAAG
GTACTCGTCG TAGGAGAGAA ATAA
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| Protein sequence | MTKARHDLNR LLNKPFNINL KLPFNKLSAA LCSAALMLST QTFALPQMEA ATNAKTVSVQ
SADVQSTSSE RVTKPVIYQV FTRLFGNTQT ANIPWGTKAQ NGVGKFSDFT PKALESIKSL
GVSHIWYTGI PHHALVGDYS QYGIGTDDPD VVKGRAGSPY AVKDYYNVNP DLADDPAKRL
EEFEALIART HEAGMQVIID IVPNHVARGY HSLSAPTGVT DFGASDNTQV SYARNNNFYY
VVGTPFEVPS LSPDLKPLGG EPHPLVDGKF DEFPAKWTGN GARAAKPDQN DWYETVKINY
GVTPDGSLDF PQLPEGYGKK SAAEHYDFWQ QVPKESIPSS WIKFNEIAQY WLAKGVDGFR
YDMAEMVPVA FWSYLNSHIK HTNPDALLLA EVYTPSRYRD YIHLGKMDYL YDKVGLYDSL
KAIIQGKAGT QAIERDRNSV EDIAEHMLHF LENHDEQRIA SPEFAGDPLI ALPAMVISTT
LSQAPTLLYF GQEVGEDGSE DAGFGKPSRT SIFDYVGVPA HQRFMNLGKF DGGQSSKEEL
SLRAYYAKLL NLSHSLSALS GEYGDLHRAN IDQGKGYDAD LFAFSRFDDK QKLIIVSNFA
KDKAKHLTLE LPPALVKRWQ LAPGTYPLKE MLSDKKPAAP LTLTTKGGQV TLNLAPLESK
VLVVGEK
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