| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1884 |
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| Symbol | |
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| ID | 4921717 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2168190 |
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| End bp | 2169656 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163452 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001094009 |
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| Protein GI | 127512812 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.972108 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTTTG CAAACCTTGG CCTGCCAAAC GCTGTGCTCA CTAACCTTGA GCAACTTGGC
TACAGCCAGC CAACGCCAAT CCAGCAAGAA GCCATTCCCC TGGCGCTCAA GGGTAAGAAC
CTGATCGCGG CGGCGCAAAC CGGCAGCGGT AAGACGGCGA CTTTCGTGCT GCCTATGCTC
ACGACCCTGA TGCAGGGGCA GACACAGCGC AAGAAGCGGG CGCGGGCAAT CATATTAGCG
CCGACACGCG AGTTGGTGCT ACAGGTAAAT GATCGCATTG GCGAATATGG TAAAGGCTTA
GGGCTGGTAT CCATGGCCGT TTATGGCGGC GTCGATGTGC AGGCCCAAAA GCAGCAGTTG
ATCGAGGGCG TCGATATCGT GGTGGCCACC CCGGGTCGTC TGCGGGATCT CTACACCCAG
AGAGCGATCC GCTTCGACGA GGTGGAGCTA CTGGTGCTCG ATGAAGCCGA TCGCATGTTG
GATATGGGCT TTATCGAGGA TATCACCAAG ATCTTAGATA CCCTGCCAGA AGAGAGGCAG
AACCTGCTGT TCTCCGCCAC CCTGTCTCGC CCGGTGCGCG AGTTGGCGAA ACAGGCGGTG
CCTAAGGCGA TCCACCTGTC GGTCACTAAG AATCAAGATA GCCAGCCAGA TATCGAGCAG
TGGATCACCA CGGTCGATAA GGATAAGAAG TCGGCGCTGC TCAGTCAGCT GATTAAAGAC
AATGCCTGGC CCCAGGCGCT TATTTTTATC GAGACCAAAC ATGGTGCCGC CAAGTTGGTG
AGCCAGCTGG AGAAGCGGGG CATTCAGGCC GAGTGTATTC ACAGCGGTCG TACTCAGGCG
GTGCGTGAAC AGATCCTGGC GGACTTTAAG GCGGGTAAGA TTGCCTACCT TATCTCCACC
GGCATCTCGG CGCGCGGGAT AGATATCGAT AACCTGCCGC TGGTGATCAA CTATGACCTG
CCGTTTCCCG CTGACGAATA TGTGCATCGC ATCGGGCGTA CCGGCCGAGC CGGCGCCAAG
GGCGAGGCGA TCTCCCTGGT GTCTAAAGAT GACTTTAAGA ACCTCTGCAT GATCGAGAGC
CGCCTCGATC ACTTGCTGGA ACGTCGAGAG ATAGAAGGTT TCGCGCCGAG AAAACCTGTA
CCCATCTCTA TCCTTAACTA TGTGCCCAAG GCCAAGCGTG AGCAGGCGCA GGGTGAGAAG
GGTAGCGAAG CCGCGGCTAG CCAAGGTGTG AAGGCTCCTA AGGAAGCTAA GGATAAGCGC
AGAGAAGATA AGCCTAGAGG GCAATCCAAG TCTCAAGGTA AGGCAACTCC TTATAAAGGT
AGCTCTACAG ACAAGAAGGC TCGGCCTGCT AAAGCTAAAT CAGCAGCGCC TAGTGATCGC
GGTGGGAAAG ATCAAAGGTT AGAGCATAAG GTTGAAGAAA AGCCAGCTTT TAATCCTTGG
GCCGAAAGTC GGCCGGGTAA GAAATAA
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| Protein sequence | MTFANLGLPN AVLTNLEQLG YSQPTPIQQE AIPLALKGKN LIAAAQTGSG KTATFVLPML
TTLMQGQTQR KKRARAIILA PTRELVLQVN DRIGEYGKGL GLVSMAVYGG VDVQAQKQQL
IEGVDIVVAT PGRLRDLYTQ RAIRFDEVEL LVLDEADRML DMGFIEDITK ILDTLPEERQ
NLLFSATLSR PVRELAKQAV PKAIHLSVTK NQDSQPDIEQ WITTVDKDKK SALLSQLIKD
NAWPQALIFI ETKHGAAKLV SQLEKRGIQA ECIHSGRTQA VREQILADFK AGKIAYLIST
GISARGIDID NLPLVINYDL PFPADEYVHR IGRTGRAGAK GEAISLVSKD DFKNLCMIES
RLDHLLERRE IEGFAPRKPV PISILNYVPK AKREQAQGEK GSEAAASQGV KAPKEAKDKR
REDKPRGQSK SQGKATPYKG SSTDKKARPA KAKSAAPSDR GGKDQRLEHK VEEKPAFNPW
AESRPGKK
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