| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1878 |
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| Symbol | |
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| ID | 4922031 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2163071 |
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| End bp | 2164156 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163446 |
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| Product | 2-nitropropane dioxygenase, NPD |
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| Protein accession | YP_001094003 |
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| Protein GI | 127512806 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.842086 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAGCA AAAACTTCAA GGCATTACTG GGTACAGAGC TGCCTATTAT TCAGGCGCCG
ATGGCTGGGG TGCAAGACAG CAAACTCGCC ATCGCGGTGG CTAACGCCGG TGGGCTTGGG
TCAATCCCTT GCGGCATGTT GAGCTCGGCG CAGATAGTCG ATGAAATTAA ACGTTTTCGG
GCGGCGACCA GCGCGCCACT AAACCTTAAT TTCTTCTGCC ATGAGTTGCC GCCGTTCGAC
AAGCAAGCTC AGGCGCGCTG GCATGAGTTA TTAGCGCCAT ATTTTGATGA ACTTGAGATA
GCGGCCGATC TCGGCCAAGG CGGCGCGAGT CGTATGCCTT TTAATCATGA GATCGCTGAT
GCCATAGAAG CCTTTAAGCC AGAGGTGATT AGCTTTCATT TCGGCCTGCC GCAAGAGAAT
CTGCTTGAGC GGGTGAGATC TTGGGGCGCA AAGGTGATCT CAAGTGCCAC CACAGTAGCC
GAGGCAGAGT ATCTGGCGGC GCGAGGCGTG GATGGCATTA TCGTTCAGGG CGTCGAGGCG
GGTGGTCATC GCGGTATGTT TCTTAGTGAT GATGTGAGCA CTCAGGTGGA ATTGGAACCC
CTGCTGACTA AGATCGCCTC GCGAGTCGAT GCGCCGCTGA TCGCCGCCGG CGGCATAGGT
GATAGTCACG GGGTAAAAGC CGCCTTAGCA ATGGGGGCCA GCGCCGTGCA GATAGGCAGC
GCCTATCTCT TGTGTGATGA GGCCAATACC TCAAGTTTGC ATAGAGCGGC CATCGAGAAT
GCGGCTAATA CAGAAGGGAG TACGGTTAGG GCTGAAGGCT GTACTGCGCT CACTAATCTC
TTCTCGGGTA GACCGGCAAG GGGCCTGGTT AACCGCGCCA TGTCAGAGCT TGGGGCAATA
AACGACTCGG CCCCGGCCTT TCCCTATGCG ACTAACCTTA TGGCGCAGCT ACGCAAGGCG
AGTGAGGCCC GCGGCATGAG TGATTTCTCG CCCCTCTGGT GTGGGCAAAA TGTCGGCAGC
TGCAAGAAGA TCGCCGCAGG CGAGATGACC CTGGCGCTAA TGCAGCAAGT CACGCAACTA
GAGTAA
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| Protein sequence | MNSKNFKALL GTELPIIQAP MAGVQDSKLA IAVANAGGLG SIPCGMLSSA QIVDEIKRFR
AATSAPLNLN FFCHELPPFD KQAQARWHEL LAPYFDELEI AADLGQGGAS RMPFNHEIAD
AIEAFKPEVI SFHFGLPQEN LLERVRSWGA KVISSATTVA EAEYLAARGV DGIIVQGVEA
GGHRGMFLSD DVSTQVELEP LLTKIASRVD APLIAAGGIG DSHGVKAALA MGASAVQIGS
AYLLCDEANT SSLHRAAIEN AANTEGSTVR AEGCTALTNL FSGRPARGLV NRAMSELGAI
NDSAPAFPYA TNLMAQLRKA SEARGMSDFS PLWCGQNVGS CKKIAAGEMT LALMQQVTQL
E
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