| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1871 |
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| Symbol | |
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| ID | 4924353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2149644 |
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| End bp | 2150258 |
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| Gene Length | 615 bp |
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| Protein Length | 204 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640163439 |
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| Product | DNA polymerase III, epsilon subunit |
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| Protein accession | YP_001093996 |
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| Protein GI | 127512799 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
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| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.235733 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000714256 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCCCAAG ATGCCATAGT GGTATTGGAT TTTGAAACCA CAGGCCTCTC CCCCTTACAG
GGCGATCGTG CCATCGAGAT AGGGGCGGTT AAATTACAGC AAGGTGTAGT GGTCGATAGG
TTTCAGCAGC TGATGAATCC CGGCTTTGCC GTCAGCAGTT TCATCGCTGA TTACACAGGG
ATCACCAATG CGATGCTCAG TGATGCGCCA AGTTGCGAGA CCGTGATGGC TGACTTTGCC
GACTTCATCC AGGGATGTCA TCTGGTGGCT CACAACGCCA GTTTCGATCA GAAATTTTTA
ACGGCGGAAT TTGCGCGCAT CGACCTGGAG CAATCCCAGC CCTTTGCCTG TTCGCTGCTG
CTGGCAAGAC GCCTGTTTCA AGCGGTGCCT AACCATCAGC TAGGCACCTT AGTGAATTAT
TTAGGTATCG CCAACGATGG CGTGTTTCAC CGCGCGCTGA ACGACGCCGA GGTTACCGGT
GCCTTATGGC TGGCGCTGAG CGATGCGGTA TCACAGAGAT GGGCCTGCCC TGCACCCAGT
TTTGAATTGA TGCTTAAGCT ACAACGTCAA CCTAAGCATC AGCTAGAAAA GTTTATGCGA
GCCTATTTAG GCTAA
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| Protein sequence | MSQDAIVVLD FETTGLSPLQ GDRAIEIGAV KLQQGVVVDR FQQLMNPGFA VSSFIADYTG
ITNAMLSDAP SCETVMADFA DFIQGCHLVA HNASFDQKFL TAEFARIDLE QSQPFACSLL
LARRLFQAVP NHQLGTLVNY LGIANDGVFH RALNDAEVTG ALWLALSDAV SQRWACPAPS
FELMLKLQRQ PKHQLEKFMR AYLG
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