| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1794 |
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| Symbol | |
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| ID | 4924312 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2054408 |
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| End bp | 2055208 |
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| Gene Length | 801 bp |
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| Protein Length | 266 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640163355 |
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| Product | sortase family protein |
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| Protein accession | YP_001093919 |
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| Protein GI | 127512722 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
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| TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.32656 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAATC GTCGCAGACG CCTGGGACTC AGGCATGTTT TGTTTCTGAC CGCCTTGATG
GCGGCAATGA CACTGATCTT TAAAGGAGGC TATATGCAAG CCAAGGCACA TTTTGCCCAG
TTCCTGATCG AGCGGGCATG GGACAGAACC TTAGCGGATC GTAAAGCCCA TAAGCCCTGG
AGCTGGGCCG ATACCTATCC GATCGCCAAG CTGCACTTTG CAGACGAGCA GGGGAGGCGC
CGCGGCGCGC CGCTGTATGT GCTGGCGGGC GCCTCCGGGC GCAATCTGGC CTTCGGACCC
GCCGCCATCC TGGCGGATAA TCAGATCAAT CATTGGGGCA ACACGGTTAT CGCCGGTCAC
AGGGACACTC ATTTCGCTAG GCTCGAGGGG ATCTATCCGG GTCAGGTGAT CACTTTGCAG
GATGCCTCGG CCGAGACCAT AAGTTATCGG GTGCTGGGCA CTAAGGTGGT GGATGAGCAA
GACACGGCGC TGCTGGCCCA AGAAGATGCG CTGCGTCTGA CCTTAGTCAC CTGTTATCCC
TTCGACAGCC TGGGCGGCCA GAGTCGTCAG CGCTTCGTGG TGATCGCCGA GCCCATGCTT
AGTGAGGGAG AGCATGGGGG TGAGGAGGCA GTAGCGACGC GTCTGCCCAC ATCGCCCGAT
ACGCCGACTA TCTCTGAGGA AACTGAGCTA TCTAATGTAC CTCAGTCGCC ACAGGGATAT
CAGTCGCCCC AGGGATATCA GTCGCCTCAG GGATATCAGT CTCCTCAGTT ACGTCAGCAA
TCGGGGCGAC TTCAATCTTA G
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| Protein sequence | MMNRRRRLGL RHVLFLTALM AAMTLIFKGG YMQAKAHFAQ FLIERAWDRT LADRKAHKPW
SWADTYPIAK LHFADEQGRR RGAPLYVLAG ASGRNLAFGP AAILADNQIN HWGNTVIAGH
RDTHFARLEG IYPGQVITLQ DASAETISYR VLGTKVVDEQ DTALLAQEDA LRLTLVTCYP
FDSLGGQSRQ RFVVIAEPML SEGEHGGEEA VATRLPTSPD TPTISEETEL SNVPQSPQGY
QSPQGYQSPQ GYQSPQLRQQ SGRLQS
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