| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1783 |
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| Symbol | |
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| ID | 4922673 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2040194 |
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| End bp | 2041252 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640163344 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001093908 |
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| Protein GI | 127512711 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACCGG ATCAGCAATT TGCCCGTTTA GTTAAGTTTG CCAGCATCGG CTTCATTCTG
CTGTTTGGTT ATTTCCTGGT GGCCGACCTT AAAATGCCGC TAACCACCCA GGCGATGGCG
ACGCGCACCA TTACCCAGGT AGCGCCTCAG GTGAGTGGCC GAGTCGTCTC GGTACAGGTC
GCCAATAACC AGAAGGTGCA GCAGGGGGAT CTGCTGTTTA GCCTGGATGC CACCCCTTTC
TTGCTGGCCC AGGAGCAGGC CGAGTTGGCC CTGGAGCAGG CGAGACAAGA TAACGCCGAG
TTAGATGCGG CCATTGCCGC CGCGACCGCC GAGGTGAACG CCAAAGAGAT CGCCTACGCG
CTCAAGCAGC GTGAGGCCAA ACGTATTCAA TCACTCTATG CTAATCAGAG CGTGTCGCAG
CAGATGATCG ATCAGGCCCA AACTGAGGTG AAAGCCAGTC GCTCACAGTT GCTGGCCGCC
AAGGCGCAGC TGGCTAAGGT ACAGACCCTG AGGGGCTTGC CGGGTGAGGA TAACCTCAAG
CTGCGTCAGG CCAAGAATCG TCTGTCTCAG GCAACATTGG CCCTGAGTTA TACCCAGATC
CGCGCCGAAC ACGATGGTGT GGTCACCAAC GTGCAGCTGG CCTCGGGCAA CATGGTGAAT
CAGTCGACGC CCGTCATGGC GCTGCTGCTG GATAATGTGG ATGTGATCGC CGATTTTCGT
GAGAAGAACC TGCGCCACAT CGCCCCTGGT GCGACCGCGC TGGTGGCCTT CGATGGTCGC
CCGGGTGAGC TGTTTCAGGC GAGCGTCAGT AGTGTCGATG CCGGTGTGAG TCAGGCCCAG
TTCGATGCCA ATGGACGTCT GGCGACTCCA ACCGAGTCAA ATCGTTGGGT GCGAGATGCC
CAGCGTTTCC GTCTTCATCT GGAGCTTGCA CCCGATGTGG CCATAACCCT GCCGGCCGGC
GCCAAGGCAA CCGTGCAGCT TCAGCCAAGC AATGTGATCT ATGAGCTGTT TGCCAAGGTG
CAGATCAAGT TCATCAGCCT GCTGCATTAC ATCTACTAG
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| Protein sequence | MTPDQQFARL VKFASIGFIL LFGYFLVADL KMPLTTQAMA TRTITQVAPQ VSGRVVSVQV
ANNQKVQQGD LLFSLDATPF LLAQEQAELA LEQARQDNAE LDAAIAAATA EVNAKEIAYA
LKQREAKRIQ SLYANQSVSQ QMIDQAQTEV KASRSQLLAA KAQLAKVQTL RGLPGEDNLK
LRQAKNRLSQ ATLALSYTQI RAEHDGVVTN VQLASGNMVN QSTPVMALLL DNVDVIADFR
EKNLRHIAPG ATALVAFDGR PGELFQASVS SVDAGVSQAQ FDANGRLATP TESNRWVRDA
QRFRLHLELA PDVAITLPAG AKATVQLQPS NVIYELFAKV QIKFISLLHY IY
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