Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1733 |
Symbol | |
ID | 4923677 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1984164 |
End bp | 1984628 |
Gene Length | 465 bp |
Protein Length | 154 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640163295 |
Product | thioesterase superfamily protein |
Protein accession | YP_001093859 |
Protein GI | 127512662 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
TIGRFAM ID | [TIGR00369] uncharacterized domain 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.240519 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCATGG TCACGCCAGA AGCCAATCAG GCATTAAACG TTAAAGATAT CGTTAAGAAG GCCACGGAGC TGAACGATTT TGGTCACCTG CTGGCGCATG TTCCTTATGC TAAGTTTATC GGCATGCAGG TGGCGCGCTT CGGCGACGAG CTGGTGTTTC AGCTACCGAA GAAAGATGAA AATATCGGTA ACCCAACCCT GCCGGCCATT CATGGCGGTG TGATCGCGGG ATTTATGGAG ATGTCGGCGA TCGTTCAGCT GATGGTGTTC ATGCAGACCA CTAAGGTGCC CAAAATCGTC GATTTCTCAA TCGATTACCT GAGGGCTGGC CACCACAGAG ATAGCTTCGC CGAGTGTAAG ATCACCCGTC AGGGACGCCG CGTGGCGAAC GTAAACATCA ACTGCTGGCA AACCAACCGT AAGGCCTTGA TTGCCACCGC CCGTGCCCAT TTTCTGATCG AATAG
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Protein sequence | MTMVTPEANQ ALNVKDIVKK ATELNDFGHL LAHVPYAKFI GMQVARFGDE LVFQLPKKDE NIGNPTLPAI HGGVIAGFME MSAIVQLMVF MQTTKVPKIV DFSIDYLRAG HHRDSFAECK ITRQGRRVAN VNINCWQTNR KALIATARAH FLIE
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