| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1698 |
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| Symbol | |
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| ID | 4920787 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1951473 |
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| End bp | 1953731 |
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| Gene Length | 2259 bp |
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| Protein Length | 752 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640163260 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001093824 |
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| Protein GI | 127512627 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4590] ABC-type uncharacterized transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.719566 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAACTC AGGTCATTCA ACCTGGTTCT ACTGCAACAG ATTTGTTGAT GGGCAAGGGC
TCCAGCAAGC GAGCATTTAA GGATAAGCTC ACCCAGATAG GGGTGACGAT GGGCGGCACC
ATGGTCTTCG TGGCGCTCTT GCTGATCTTT TTCTACCTAC TCTATGTTGT AAAGCCGATT
TTCGATGGGG CAGATGTCAC ACCAGTGATA AATGTCGAAC TGCAAGATGC CAAATCGCCA
GCACTTATGG TGGGCAGCGA CGAGCAAAAC GAGATCCTCT ACCGCGTGTC GCAGGATGGC
GGGGTCAGCT TCTATAGCGC CCTAAGTGCC AGCCTGGTCA AGCAGGAGCA GATAAATGTA
CCGCAGGACG CCGAAATCGT CAGCAGCGTC GCCGGTGTAC CGAGCGAGCA GCGCTTTGCC
TTCGGCCTCT CTAACGGTCA GGTGATCATA GGCGGTGTTA ACTTCGCCGT GACCTATCCC
AATAATAAGC GTCTGATCAC CCCAAGCCTG CGTTATCCGC TGGGCGCATC GCCGCTACAG
GTATCTGAGT CGGGCACGCC ACTTTATCAG CTGGCCTTCG CCTCGGCCTC TGACAAACTC
AGCTTCGCCT ATCATGATGC CAATGGTCGC TGGTTCCTGA CCCGCCACAA CGGTGAAGAG
AACATGATGA CCGAAGAGGT GGAGTGGGAA GCGACTACCA GTCAGATCCA GGAAGCGCCT
GCTCAGGTCG ATCAGCAGTT GATGACCCCA GATCAGCGCC AGCTGCTGCT GCGCTCTGGA
AATCGCCTGT ACGTCTACGA TATCCGCTAT GTGGATGAGA TAGCCCTAAG TCAGGTGATT
GAGCTTGAAC GTGCCAAGAC CAAGGTGACA GACGTTGCCC TGCTGGCCGG CGCCAGCTCG
CTGCTGGTGA GCTATGACAA TGGCCAAATC TTCCAGTATT TCCAGGTTAA TGGCGACAAG
GGTCGTCAGT ACCAGGAGAT CCGCGACTTT AAGAACAAGG CGGGCGTGAA GCGCATCGCT
GGTGAGTTCT ACCGTAAGAG CTTCGCCACA GTCAGCGAGT CTGGCGAGCT GGACCTGCTC
TATACCACGA GTCAGCGCAA ACTCTTCACC GAGACTTTCG ATCTGGCCCA CGCCACCCAG
ATGGGCTTTA GCCCACGTGC CAACGCCCTG GTGGTCGAGG CGGGTAACAA GCTGCATCTG
TTTGCGGTGG AAAACAGCCA CCCAGAGGTG TCTTGGAGCG CCATGTGGAG CAAGGTGTGG
TACGAAGGTT ACCCCGAGCC GCAATATGTG TGGCAGTCGA CCTCAGGGTC GGATGACTTC
GAAGCCAAGC TCAGTCTGAT GCCGCTGGCC TTCGGCACCA TGAAGGCTGC GCTGTACGCC
ATGTTATTCG CGACGCCTTT GGCCATTGCC GGCGCCGTCT ATACCGCCTA TTTCATGTCG
CCAAAAGTGC GCGCCGTGGT GAAGCCGACC ATCGAGATCA TGGAAGCCTT GCCGACGGTT
ATTCTGGGCT TCCTGGCCGG TCTCTGGCTG GCACCGCTTA TTGAGGATCA CCTGCCGGGG
ATCATCATGT TGCTGGTGCT CCTGCCTATC AGTATTTTGT TGACGGCGCT GGGCTGGTAC
AAGTTGCCGG GTCGCTGGAA GCAGCGTCTG CCTGAGACAT ACCAAGAGCT GATGCTGATA
CCTGTTATCT GTTTCGTGGG CTGGTTTGCC TTCTATATCA GTCCGAGTAT CGAAGTGGCC
TTCTTCGGCG GCGATACCCG TTTGTTTATC ACCAATGAGC TGGGGATCAC CTTCGACCAA
CGTAACGCGC TGGTAGTGGG TATCGCCATG GGCTTTGCAG TTATCCCAAC CATCTTCTCT
ATCGCCGAAG ACGCCGTGTT CTCTGTACCG CGTCACCTGT CTAACGGCAG CCTGGCGCTG
GGCGCAACTA ACTGGCAGAC CCTGACCCGC GTGGTACTAC TTACCGCGAG CCCGGGGATC
TTCTCTGCCG TCATGATGGG CCTTGGCCGC GCCGTGGGTG AGACCATGAT CGTGCTTATG
GCTACCGGTA ACACTGCCAT CATGGAGTGG AGCGTGTTCG AGGGGATGCG TACCCTGGCG
GCTAACATCG CCGTGGAGAT GCCTGAATCG GCTATCGGCA GCTCGCACTA CCGCGTGCTG
TTCCTGGCGG CCTTCGTACT GTTTATCTTC ACCTTCCTGT TTAACACCAT CGCCGAGGTG
GTGAGACAGC GTCTGCGTGA ACGCTACAGT TCACTCTAA
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| Protein sequence | METQVIQPGS TATDLLMGKG SSKRAFKDKL TQIGVTMGGT MVFVALLLIF FYLLYVVKPI
FDGADVTPVI NVELQDAKSP ALMVGSDEQN EILYRVSQDG GVSFYSALSA SLVKQEQINV
PQDAEIVSSV AGVPSEQRFA FGLSNGQVII GGVNFAVTYP NNKRLITPSL RYPLGASPLQ
VSESGTPLYQ LAFASASDKL SFAYHDANGR WFLTRHNGEE NMMTEEVEWE ATTSQIQEAP
AQVDQQLMTP DQRQLLLRSG NRLYVYDIRY VDEIALSQVI ELERAKTKVT DVALLAGASS
LLVSYDNGQI FQYFQVNGDK GRQYQEIRDF KNKAGVKRIA GEFYRKSFAT VSESGELDLL
YTTSQRKLFT ETFDLAHATQ MGFSPRANAL VVEAGNKLHL FAVENSHPEV SWSAMWSKVW
YEGYPEPQYV WQSTSGSDDF EAKLSLMPLA FGTMKAALYA MLFATPLAIA GAVYTAYFMS
PKVRAVVKPT IEIMEALPTV ILGFLAGLWL APLIEDHLPG IIMLLVLLPI SILLTALGWY
KLPGRWKQRL PETYQELMLI PVICFVGWFA FYISPSIEVA FFGGDTRLFI TNELGITFDQ
RNALVVGIAM GFAVIPTIFS IAEDAVFSVP RHLSNGSLAL GATNWQTLTR VVLLTASPGI
FSAVMMGLGR AVGETMIVLM ATGNTAIMEW SVFEGMRTLA ANIAVEMPES AIGSSHYRVL
FLAAFVLFIF TFLFNTIAEV VRQRLRERYS SL
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