| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1649 |
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| Symbol | |
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| ID | 4922118 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1895318 |
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| End bp | 1896382 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640163211 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001093775 |
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| Protein GI | 127512578 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.499517 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATCTT TTTCAAAGTT TAAGTTGGCA CTTCCCCTAC TATTTGTTGC CGTACTCAGT
GCATGTGGTA ATGAGGAAAC AAAGAAAGAA GAAGAAAAGT ACGCCGTTCC CGTTGAAACG
ACGACTGTCA TACAAGGTGA TGTCTCCTCT TTTTATAGCA CTACCGCAAC CCTGGAAGCC
CCTCAGGAAG CCGACGTTGT TAGCCGCATC GCTGGTCTTA TCGAATCCAT TAAAGTCGAA
GAAGGGGATC GCGTCTCCAA GGGGCAATTG CTAGCAGTAA TCGATGCTAA GCGCCAGCGC
TACGATCTGG CCCGCTCACA GGCCGAAGTG GAAATCATCG AGCAGGAGCT CAACCGTTTG
AAGAAGATGA GCAATAAAGA GTTCATCAGC GCCGATTCCA TGGCCAAACT CGAATACAAC
CTACAGGCCG CCATCGCCAA GCGCGATTTA GCCGCCCTAC AGGTACAAGA AAGCATGGTT
CGCTCCCCTA TCGATGGCGT GGTGGCCAAG CGTTATGTGA AAGCTGGTAA CATGGCCAAA
GAGTTTGAGC AGCTTTTCTA TGTGGTTAAT CAAGACGAGC TGTACGGCAT AGTGCACTTG
CCAGAGGCTC AGCTACAGAG CCTGCGTCTA GGCCAGGAGG CCGAGCTGTA CGCCAACAAG
CACACCAAGG ATACCATTCA TGCCAAGGTG CTGCGTATAA GCCCCATCGT CGATCCCCAA
AGCGGTACCT TTAAGGTCAC CCTTTCGGTG CCTAACCAAA ATGCCCAGCT TAAGGCGGGG
ATGTTTACCC GAGTTGAGCT GAGATACGAC ACCCACAGCA ATGTAATAAC CGTTCCCTAT
AACGCCGTGG TCAATCAGGA CAATCAATAC GCCCTGTATG TCGTTCAAGG TGACAATGCC
CTGCGCCGCG AAGTTGCCCT GGGTTATCGC GAGGCCGATA CCGTAGAGGT GGTCTCAGGG
CTAGAACCCG GTGAGCAAAT AGTGATCCGC GGACAACAAA ACCTGAAAGA TCAATCCTTA
GTTGAAGTGA TCAGCCAACT AGACGTTGCT CGCGCACAAC AATAA
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| Protein sequence | MESFSKFKLA LPLLFVAVLS ACGNEETKKE EEKYAVPVET TTVIQGDVSS FYSTTATLEA
PQEADVVSRI AGLIESIKVE EGDRVSKGQL LAVIDAKRQR YDLARSQAEV EIIEQELNRL
KKMSNKEFIS ADSMAKLEYN LQAAIAKRDL AALQVQESMV RSPIDGVVAK RYVKAGNMAK
EFEQLFYVVN QDELYGIVHL PEAQLQSLRL GQEAELYANK HTKDTIHAKV LRISPIVDPQ
SGTFKVTLSV PNQNAQLKAG MFTRVELRYD THSNVITVPY NAVVNQDNQY ALYVVQGDNA
LRREVALGYR EADTVEVVSG LEPGEQIVIR GQQNLKDQSL VEVISQLDVA RAQQ
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