Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1637 |
Symbol | |
ID | 4923393 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1872569 |
End bp | 1874854 |
Gene Length | 2286 bp |
Protein Length | 761 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640163199 |
Product | DNA internalization-related competence protein ComEC/Rec2 |
Protein accession | YP_001093763 |
Protein GI | 127512566 |
COG category | [R] General function prediction only |
COG ID | [COG2333] Predicted hydrolase (metallo-beta-lactamase superfamily) |
TIGRFAM ID | [TIGR00360] ComEC/Rec2-related protein [TIGR00361] DNA internalization-related competence protein ComEC/Rec2 |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.594703 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCGAT TCATGTTTGG CTATTGTGCC ACGCTCATCT CCGCGCTGCT CTGGCCTACT TTGCCAACCT TTCCCCTTGC ATGTGCCGTC TTGGTAATTG CCGTCATCAT GCTGAAATGG TCGAAATTAT TGGCCGGTAG CCTTCTGGCT ATAGCTTGGA TGAGTCTATT TTGCCACCAA CTTTTGGTTT TTACGTCCGA TAAATCGAGC GAGCCGCCAT CAGTAAGGGG CGAAATCATA TCACTAGTTT ATCGAAACGG CGACTGGATT AATGCCGATA TTCGTATTTT AGCGGACCAT CCCTTTCATT TTCCTGACAA ATATTTACGC TTACGTTGGC AAAGCGAACA AAAAGTCGCC ATAGGTGAGG TGTGGCAATT CACCCTTGCC CCAAAGCCCA TCACCAGTGT GCTCAACCAA GGGGAATTTA ATCAGCAGGC CTACCTGCTC TCGAAGCACA TCATAGGCAA GGGCAGGGTC ATTGCGGCCA AGCGCCTGTT ACCACCACAG GGCATGCGGG CCAAACTACT GACAAAGTTG CGCCAGGATC TGGCCTCACT GGCCAATGGC GATTTGATGC TGGCGCTCAT GCTGGGCGAT AAACAGCAGA TAAGCGATGC ACATTGGCAG GGCCTGAGGC AAAGCGGAAC AGGGCATCTG GTGACCATCT CTGGGCTGCA TCTGTCTGTG CTGGCAATCT GGGTGATGGG GCTGGGGGGC TATCTGTTAG GGCGACTCAC TCCTCGTCTG GGACTCGGTA ATCGTCAGGC CATCGCCCTG GTGGCGCTGA TTTGCTGTGG TCTCTATGCC TTTCTCGCCG GACTTGGGCT GCCGACCCAG CGGGCGCTCA TCATGCTGGT GATGGTGATC CTGCTTGGTC TAATCCGCCG TTACGCATCG CCCTTCGAGC GGCTGTTATG GGCACTTTTC ATTGTACTGC TGTTGGACCC TTTAAGTATT CTCGGCGCCG GGCTTTGGCT CTCTTTTGGT GCGCTCGCCA TCATTCTCTG GTTTACGCAA TCATGGCCTG CGCCTGATGA GCGTCTATCA AGCTGGCAAC GGCTGAAATG GCGTCTTAAG CAGATGTGGC AGATCCAGTG GCGCCTGAGT CTATCGCTTG GCTTGCTGCA AGGGCTATTG TTTGGCGGCT TTGCGCCCTA CGCGTTGATA TTTAACCTTA TCTTCGTGCC TTGGTTTAGT CTGGTGGTGA TCCCCCTAAG TTTCATGGCG CTGATAACCT GGATAATCGG CATTTATCTT GGCGTGTCCG TTAGCCTGCC GCTTTATCTG TTGGATCTTG CCATTTCACC CATGACTCTT GCGTTCGATT GGCTAGGGGA GCTGCCGCTT CACTGGCTGC CAGCCTCGAT GCAGCTGGTC TCAGCTTTGG TGTTTGGCCT GCTTGGGCTT ATCCTTTGGC GACTCGCCTC CGGCGCCTGG CGTTGGATGA TCCCTGTGTT GTTCATGCCC CTGTGTCTCT GGTTTTTACC ACAGAGATTG ACGGACCCTA AAAGCTGGCA GGTGCACCTG CTTGATGTCG GGCAGGGGCT CAGCCTGGTG GTTGAGAAAC AGGGGCGGGC ACTGATCTAT GATACAGGCG CGGCGTTTGG TGAGCACTTT AGTTATGCAG ATAGGGTCAT AGTGCCCTTC TTGCATTACC GTGGCATAGG TGAGCTGGAC TATCTGGTGC TCAGCCATAG TGACAATGAC CATGCCGGCG GCGCCGATTA TCTGTTAGGT CGCTACCCTA AAGTGAAATT GGTGACAGAT CTCAGCTATC CCGGCGCCAT CGACTGTCGT CCTAAAAGCC TCAACTGGCA GGGGTTAAGA CTTGAGATTT TGGGGCCGCG CGAGCCGCAG CCCGGCAATA ATGGCTCCTG TGTCGTGCGG ATAAGCGACG GCAGGCGAAG TGTGCTCATC CCTGGGGATA TCGAGAGTGA GGGTGAGCAG TCACTCCTGA CCCAGAGCGC CGAGGTTGGC AGCACTGTCC TAATCGCGGC CCATCACGGC AGTAACACCT CATCGAGCGG GGCCTTTATT CGGGCAAGCG CGCCCGGTAT CGTGCTCTAC GCCGCCGGTT TCAACAATCG CTATGGTTTT CCCAAGGCTG AGGTGGTGAG GCGTTTTCGC GACCAAAAGG CGCTTCAGTA CAGCACGGGC GATAACGGTC AGCTGAGTTT AAAACTGGAC GAGCAGGGCA TTACCGTACT GGGTTATCGC CGGGATCTGG CGCCATTTTG GTACAATCAA CGCTTTGAAT TTGGTGAGTT TGGCAATCCA GAGTAG
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Protein sequence | MNRFMFGYCA TLISALLWPT LPTFPLACAV LVIAVIMLKW SKLLAGSLLA IAWMSLFCHQ LLVFTSDKSS EPPSVRGEII SLVYRNGDWI NADIRILADH PFHFPDKYLR LRWQSEQKVA IGEVWQFTLA PKPITSVLNQ GEFNQQAYLL SKHIIGKGRV IAAKRLLPPQ GMRAKLLTKL RQDLASLANG DLMLALMLGD KQQISDAHWQ GLRQSGTGHL VTISGLHLSV LAIWVMGLGG YLLGRLTPRL GLGNRQAIAL VALICCGLYA FLAGLGLPTQ RALIMLVMVI LLGLIRRYAS PFERLLWALF IVLLLDPLSI LGAGLWLSFG ALAIILWFTQ SWPAPDERLS SWQRLKWRLK QMWQIQWRLS LSLGLLQGLL FGGFAPYALI FNLIFVPWFS LVVIPLSFMA LITWIIGIYL GVSVSLPLYL LDLAISPMTL AFDWLGELPL HWLPASMQLV SALVFGLLGL ILWRLASGAW RWMIPVLFMP LCLWFLPQRL TDPKSWQVHL LDVGQGLSLV VEKQGRALIY DTGAAFGEHF SYADRVIVPF LHYRGIGELD YLVLSHSDND HAGGADYLLG RYPKVKLVTD LSYPGAIDCR PKSLNWQGLR LEILGPREPQ PGNNGSCVVR ISDGRRSVLI PGDIESEGEQ SLLTQSAEVG STVLIAAHHG SNTSSSGAFI RASAPGIVLY AAGFNNRYGF PKAEVVRRFR DQKALQYSTG DNGQLSLKLD EQGITVLGYR RDLAPFWYNQ RFEFGEFGNP E
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