| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1637 |
|---|
| Symbol | |
|---|
| ID | 4923393 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1872569 |
|---|
| End bp | 1874854 |
|---|
| Gene Length | 2286 bp |
|---|
| Protein Length | 761 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640163199 |
|---|
| Product | DNA internalization-related competence protein ComEC/Rec2 |
|---|
| Protein accession | YP_001093763 |
|---|
| Protein GI | 127512566 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2333] Predicted hydrolase (metallo-beta-lactamase superfamily) |
|---|
| TIGRFAM ID | [TIGR00360] ComEC/Rec2-related protein
[TIGR00361] DNA internalization-related competence protein ComEC/Rec2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.594703 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCGAT TCATGTTTGG CTATTGTGCC ACGCTCATCT CCGCGCTGCT CTGGCCTACT
TTGCCAACCT TTCCCCTTGC ATGTGCCGTC TTGGTAATTG CCGTCATCAT GCTGAAATGG
TCGAAATTAT TGGCCGGTAG CCTTCTGGCT ATAGCTTGGA TGAGTCTATT TTGCCACCAA
CTTTTGGTTT TTACGTCCGA TAAATCGAGC GAGCCGCCAT CAGTAAGGGG CGAAATCATA
TCACTAGTTT ATCGAAACGG CGACTGGATT AATGCCGATA TTCGTATTTT AGCGGACCAT
CCCTTTCATT TTCCTGACAA ATATTTACGC TTACGTTGGC AAAGCGAACA AAAAGTCGCC
ATAGGTGAGG TGTGGCAATT CACCCTTGCC CCAAAGCCCA TCACCAGTGT GCTCAACCAA
GGGGAATTTA ATCAGCAGGC CTACCTGCTC TCGAAGCACA TCATAGGCAA GGGCAGGGTC
ATTGCGGCCA AGCGCCTGTT ACCACCACAG GGCATGCGGG CCAAACTACT GACAAAGTTG
CGCCAGGATC TGGCCTCACT GGCCAATGGC GATTTGATGC TGGCGCTCAT GCTGGGCGAT
AAACAGCAGA TAAGCGATGC ACATTGGCAG GGCCTGAGGC AAAGCGGAAC AGGGCATCTG
GTGACCATCT CTGGGCTGCA TCTGTCTGTG CTGGCAATCT GGGTGATGGG GCTGGGGGGC
TATCTGTTAG GGCGACTCAC TCCTCGTCTG GGACTCGGTA ATCGTCAGGC CATCGCCCTG
GTGGCGCTGA TTTGCTGTGG TCTCTATGCC TTTCTCGCCG GACTTGGGCT GCCGACCCAG
CGGGCGCTCA TCATGCTGGT GATGGTGATC CTGCTTGGTC TAATCCGCCG TTACGCATCG
CCCTTCGAGC GGCTGTTATG GGCACTTTTC ATTGTACTGC TGTTGGACCC TTTAAGTATT
CTCGGCGCCG GGCTTTGGCT CTCTTTTGGT GCGCTCGCCA TCATTCTCTG GTTTACGCAA
TCATGGCCTG CGCCTGATGA GCGTCTATCA AGCTGGCAAC GGCTGAAATG GCGTCTTAAG
CAGATGTGGC AGATCCAGTG GCGCCTGAGT CTATCGCTTG GCTTGCTGCA AGGGCTATTG
TTTGGCGGCT TTGCGCCCTA CGCGTTGATA TTTAACCTTA TCTTCGTGCC TTGGTTTAGT
CTGGTGGTGA TCCCCCTAAG TTTCATGGCG CTGATAACCT GGATAATCGG CATTTATCTT
GGCGTGTCCG TTAGCCTGCC GCTTTATCTG TTGGATCTTG CCATTTCACC CATGACTCTT
GCGTTCGATT GGCTAGGGGA GCTGCCGCTT CACTGGCTGC CAGCCTCGAT GCAGCTGGTC
TCAGCTTTGG TGTTTGGCCT GCTTGGGCTT ATCCTTTGGC GACTCGCCTC CGGCGCCTGG
CGTTGGATGA TCCCTGTGTT GTTCATGCCC CTGTGTCTCT GGTTTTTACC ACAGAGATTG
ACGGACCCTA AAAGCTGGCA GGTGCACCTG CTTGATGTCG GGCAGGGGCT CAGCCTGGTG
GTTGAGAAAC AGGGGCGGGC ACTGATCTAT GATACAGGCG CGGCGTTTGG TGAGCACTTT
AGTTATGCAG ATAGGGTCAT AGTGCCCTTC TTGCATTACC GTGGCATAGG TGAGCTGGAC
TATCTGGTGC TCAGCCATAG TGACAATGAC CATGCCGGCG GCGCCGATTA TCTGTTAGGT
CGCTACCCTA AAGTGAAATT GGTGACAGAT CTCAGCTATC CCGGCGCCAT CGACTGTCGT
CCTAAAAGCC TCAACTGGCA GGGGTTAAGA CTTGAGATTT TGGGGCCGCG CGAGCCGCAG
CCCGGCAATA ATGGCTCCTG TGTCGTGCGG ATAAGCGACG GCAGGCGAAG TGTGCTCATC
CCTGGGGATA TCGAGAGTGA GGGTGAGCAG TCACTCCTGA CCCAGAGCGC CGAGGTTGGC
AGCACTGTCC TAATCGCGGC CCATCACGGC AGTAACACCT CATCGAGCGG GGCCTTTATT
CGGGCAAGCG CGCCCGGTAT CGTGCTCTAC GCCGCCGGTT TCAACAATCG CTATGGTTTT
CCCAAGGCTG AGGTGGTGAG GCGTTTTCGC GACCAAAAGG CGCTTCAGTA CAGCACGGGC
GATAACGGTC AGCTGAGTTT AAAACTGGAC GAGCAGGGCA TTACCGTACT GGGTTATCGC
CGGGATCTGG CGCCATTTTG GTACAATCAA CGCTTTGAAT TTGGTGAGTT TGGCAATCCA
GAGTAG
|
|---|
| Protein sequence | MNRFMFGYCA TLISALLWPT LPTFPLACAV LVIAVIMLKW SKLLAGSLLA IAWMSLFCHQ
LLVFTSDKSS EPPSVRGEII SLVYRNGDWI NADIRILADH PFHFPDKYLR LRWQSEQKVA
IGEVWQFTLA PKPITSVLNQ GEFNQQAYLL SKHIIGKGRV IAAKRLLPPQ GMRAKLLTKL
RQDLASLANG DLMLALMLGD KQQISDAHWQ GLRQSGTGHL VTISGLHLSV LAIWVMGLGG
YLLGRLTPRL GLGNRQAIAL VALICCGLYA FLAGLGLPTQ RALIMLVMVI LLGLIRRYAS
PFERLLWALF IVLLLDPLSI LGAGLWLSFG ALAIILWFTQ SWPAPDERLS SWQRLKWRLK
QMWQIQWRLS LSLGLLQGLL FGGFAPYALI FNLIFVPWFS LVVIPLSFMA LITWIIGIYL
GVSVSLPLYL LDLAISPMTL AFDWLGELPL HWLPASMQLV SALVFGLLGL ILWRLASGAW
RWMIPVLFMP LCLWFLPQRL TDPKSWQVHL LDVGQGLSLV VEKQGRALIY DTGAAFGEHF
SYADRVIVPF LHYRGIGELD YLVLSHSDND HAGGADYLLG RYPKVKLVTD LSYPGAIDCR
PKSLNWQGLR LEILGPREPQ PGNNGSCVVR ISDGRRSVLI PGDIESEGEQ SLLTQSAEVG
STVLIAAHHG SNTSSSGAFI RASAPGIVLY AAGFNNRYGF PKAEVVRRFR DQKALQYSTG
DNGQLSLKLD EQGITVLGYR RDLAPFWYNQ RFEFGEFGNP E
|
|---|
| |