| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1577 |
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| Symbol | |
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| ID | 4922957 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1807414 |
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| End bp | 1808247 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163139 |
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| Product | aminotransferase, class IV |
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| Protein accession | YP_001093703 |
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| Protein GI | 127512506 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
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| TIGRFAM ID | [TIGR03461] aminodeoxychorismate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCAGA CTATCTGGGT ATATGGTGAA CAAGCAGCAA GTGTTTCGGC GTCCGACAGG
GGACTGGCCT ACGGCGATGG CCTGTTTGCC ACCATGCGCT GTCGAGGCGC TGAGGTACTC
TTCATCGAGA GTCACCTGCT TCGTTTGGCC CAAGGGGCTC ATCGCCTTGG CTTCCCGCTG
CCAGATGCTG CTGTGCTGAG CGAGCAAATA GCAAAGGCCT GTGAGCAGGG GGCCAAACAG
TTTTCCCAAG ATTATTGCCT CAAGTTACTC GTAAGCCGCG GCACTGGCGG ACGCGGTTAT
ATGCCGCCGC AAACGCCCGC ACCGACCTGT GTGTTGTCGC TACATGAGAT CCCCGCGCAT
TACCGTCAGT GGCAAGCTGC TGGCATCAAG TTGCAACTAA GTCCGGTGAC GCTCGGCCAG
CAGCCGCTGC TGGCGGGCAT GAAACACCTT AATCGTCTCG AGCAGGTGTT GATCCGCACA
CACAAGTTAG ATGACGGATT CGATGATTGG CTGGTCTGCG ACACGGCTGG CAACATTATC
GAGGCCTCCA TGGCCAACCT CTTCTTTATA AAGGGCCGCA CCATAGTTAC GCCGAGTCTG
GATCAGGCCG GGGTGGCTGG TGTGATGCGC GAGCAGTTGT TGCTCTGGTT TGTCGAGGCC
GGGTTTACTC TCGAGGTGCG CCGCGTATCA TCCGAAGAGC TCAAGCATTT TGACCATGTT
CTGGCCAGCA ACAGCCTGTT TGGCGCTGTG CCGGTGAATG GCATCGCAAA GCACTCATTC
GGCCATAGCC CTCTGCTAAC CCAATTGCTA CACGATCTAA AAATAATATT ATGA
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| Protein sequence | MSQTIWVYGE QAASVSASDR GLAYGDGLFA TMRCRGAEVL FIESHLLRLA QGAHRLGFPL
PDAAVLSEQI AKACEQGAKQ FSQDYCLKLL VSRGTGGRGY MPPQTPAPTC VLSLHEIPAH
YRQWQAAGIK LQLSPVTLGQ QPLLAGMKHL NRLEQVLIRT HKLDDGFDDW LVCDTAGNII
EASMANLFFI KGRTIVTPSL DQAGVAGVMR EQLLLWFVEA GFTLEVRRVS SEELKHFDHV
LASNSLFGAV PVNGIAKHSF GHSPLLTQLL HDLKIIL
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