| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1557 |
|---|
| Symbol | |
|---|
| ID | 4921667 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 1787202 |
|---|
| End bp | 1788362 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640163119 |
|---|
| Product | cupin 4 family protein |
|---|
| Protein accession | YP_001093683 |
|---|
| Protein GI | 127512486 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2850] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.215237 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACG CCATGTATAC TCCCAACTTC GATACCCAAG AGTTTTTAGC CCATCACTGG
CAGAAGCAGC CTCTGGTGAT CAAAGGCGCC TTCGCGCACT TTCAAGATCC TATCGCCCCC
GATGAACTGG CGGGACTCGC CTGCGAAGAG GAGATCGCCT CACGCATCGT CCTGACCAAG
AAAGATAACT GGGAGATCTT CCAGGGCCCC ATCGAAGATT ACTCCCCCTT TGGCGATGCC
AACTGGCAGC TACTGGTCCA GGCCGTCAAC CACTGGTACC CGGATGTAGA GCCCCTGGTT
AACGCCTTTC GTTTCATCCC CGACTGGCGC TTCGACGATC TCATGGTCTC CTACGCCACG
CCCGGTGGTG GCGTCGGCCC TCACATAGAC AACTATGATG TCTTCTTGCT GCAGGGCGAA
GGCAGGCGCC GCTGGAAAGT CGGCGCCAAG GGGCAATATT CGCCCCGCGG CGGCGATACC
CACACGGCGC TGATCGATGA TTTTGAGCCC ATCCTGGATG TGGTACTCGA GGCCGGCGAC
ATGCTCTATA TCCCGCCAGG CTTCCCCCAC CGTGGTGAGA CATTGGAGAC GGCACTGAGT
TACTCCATAG GGTTTCGCGC CCCCAGCCAA CAGGAGCTAT TTAGCAGCAT TGCCGATCAT
CTCATCGACA CCAACGGCGG CAATAAGCGC TTTACCTCGA ACCAAGAACC CGCTAGCCCT
GGCCTACTGA GCGTCGAGCA GCAAGCAGGC ATGTTGGCCC TGGTCTCAGA GATCTTATCC
CAGCCAGACC ATTATCAAAC CGTGTTGGGT CAGACCCTGA GTCAGAACCG CTTCGAACTT
GATCTGGCAG AGCAAGGGGA AAGTTACAGC CAGGAAGAGC TGATGGAAGC CCTGGAAGAT
GGTGCCTGCC TCCAACGCAT CGGCGGGCTT AAGGTGATTC GTCTCGAAGG CGATAAACAC
CTTAGGCTCT TTATCAATGG TGAGATCTAC GACTTTGATG CTGTTGATGA TGACGATGCA
GATGAGCTAG ATGACAAACT CATGCTGCTG GCCAATGCAT TTAGCTTCGA GGGCAAGCAG
GCACTGGACC TGTGTCAGCG TGAGGCCATA GGCCAATACT TTATCTGGCT GCTTAACTCT
GGCTACGCCT ACCTGGCATA A
|
|---|
| Protein sequence | MTDAMYTPNF DTQEFLAHHW QKQPLVIKGA FAHFQDPIAP DELAGLACEE EIASRIVLTK
KDNWEIFQGP IEDYSPFGDA NWQLLVQAVN HWYPDVEPLV NAFRFIPDWR FDDLMVSYAT
PGGGVGPHID NYDVFLLQGE GRRRWKVGAK GQYSPRGGDT HTALIDDFEP ILDVVLEAGD
MLYIPPGFPH RGETLETALS YSIGFRAPSQ QELFSSIADH LIDTNGGNKR FTSNQEPASP
GLLSVEQQAG MLALVSEILS QPDHYQTVLG QTLSQNRFEL DLAEQGESYS QEELMEALED
GACLQRIGGL KVIRLEGDKH LRLFINGEIY DFDAVDDDDA DELDDKLMLL ANAFSFEGKQ
ALDLCQREAI GQYFIWLLNS GYAYLA
|
|---|
| |