| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1508 |
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| Symbol | |
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| ID | 4922638 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1729343 |
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| End bp | 1730116 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163063 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001093634 |
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| Protein GI | 127512437 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.118262 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.888378 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCTTA CTAGGGCCTT GATGTTGGCG GCGGGCTTGC TCGCCGCGCA GCCCATCTAC
GCCGGCGAGG TCGAAATTGA GCGAGTAATG CGGGTCTGCG TCGACCACTA TCCGCCGTTT
CAGATCCTAC AGCCTGAGCA GCCACCCATA GGTGAGAATA TCGCCGCGCT CGAGCTGTTT
GCCAGCCTGT TACAGCGCCA GTTAACCTTT ATTGCCAGCC CCAACTTCGC CCGTTGCCTG
CATATGCTAG AGCAGGGTAG CGTCGATGTG TTGGCCGGAA TATACGCCAA GCCTGAGCGT
GCCGCCTTTA GCTATTTTCT GCCCTATCGC AATGACGGTC GCTTCGTCTT CATCAGCCAA
CAGACGCTGG CGAACGTGAA TGACTATGAG GATCTCAGCG CGCTTTCTAT CGGCGTGTCG
CGGGAGACAG AGTATTTCGA TCGTTTCGAC AGCGATGCCA AGCTGAACAA GGTGCAGACC
AATGATGTGA TCTCGGCAAC CAACATGCTA CTCAAGGGGC GCTTCGATCT GCTAATCGTC
TCAGAGGTGG TACTGCCTAG CCTGAGGGCC CGTTTCAGTG ATTTCGACGA CAAGCTTAAG
GTGCATCCTT ATACCCACGA GGAGCAGCGC CTGGTCTATT TCGGCGTGAG TAAGCGACAT
CAGATGGCGA TCCCCCTGGG TGAGATGCAG GCGATTATCG GCAAGGCCTA TGAAGAGGGG
CGCTTCATGC AGGCGGTCGA GGAGTTTGCC ACGCATCATC TCGAGCATTA TTGA
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| Protein sequence | MQLTRALMLA AGLLAAQPIY AGEVEIERVM RVCVDHYPPF QILQPEQPPI GENIAALELF
ASLLQRQLTF IASPNFARCL HMLEQGSVDV LAGIYAKPER AAFSYFLPYR NDGRFVFISQ
QTLANVNDYE DLSALSIGVS RETEYFDRFD SDAKLNKVQT NDVISATNML LKGRFDLLIV
SEVVLPSLRA RFSDFDDKLK VHPYTHEEQR LVYFGVSKRH QMAIPLGEMQ AIIGKAYEEG
RFMQAVEEFA THHLEHY
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