| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1492 |
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| Symbol | |
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| ID | 4924005 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1715681 |
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| End bp | 1717168 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640163047 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001093618 |
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| Protein GI | 127512421 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACGG CTAAGTTTGT CCAGGGCTCC ATCATGCGCC ACATACTGGT GATGAGCTCC
ACCGCCGCCA TCGGCATCTC GGCGCTGTTT GTGGTGGATC TGATCGACAT CTTCTTCCTT
AGTCTGCTGG GGGAGCAGGA GTTGGCCGCG GCCGTGGGCT ACGCGGGCAC CATCTCCTTC
TTTACTACCT CTATCGGTAT CGGCCTCTCT ATCGCCCTCG GCGCCCTGGT GTCTCGCGCC
GTGGGGGCCA AAGAGTTTGA GCTGGCCAAG CGTTTGCTGC TCAATAGCGC CGTGGTGACA
GTGCTGGTGG CCTCTGTTGT CGCCATCATA GTCACCTGTT TTATCCCCGA GTTACTCACC
TTGGTGGGTG CCACGGGCCG CACAGGTGAG CTGGCCGCCG GTTACCTCTA TATTCTGGTG
CCCTCCATGC CCATCATCTG TCTGGCGATG GCGTTAGGGG CCGCGCTCAG GGCGGTAGGC
GATGCCAAGC TCTCCATGGT GTCGACTCTC ACTGGGGGCG GGGTCAATTT GGTGTTTGAC
CCTATCTTCA TCTTCCTGCT GGCCATGGGT ATCGAAGGGG CGGCGCTCGC CTCTGTGCTG
GCGCGTCTCG CCGTGTTGCT GGTGGCCGCA AGGGGCGTGG TGGTCAAGCA CAAGCTGTTT
GGCCGTTTCG ATTTGACCGC CTTCAAGGAA GATATCAAGC CGATTTTTGC CATCGCGGGC
CCGGCGATGA TGACCAACAT CGCCACCCCC ATAGGCAACG CTGTGGTGAC CCGCGCCATC
GCCGAGTTTG GTGACAGCTA TGTGGCCGCC TGGGCCGTGC TGGGCAGGTT GACGCCCGTG
GCCTTTGGCA TGATCTTCGC GCTAAGCGGC GCCATAGGCC CGATAGTCGG GCAGAACTTC
GGCGCGCGGG AGTTTGCCCG AGTGCGTCAG AGTCTCACCA AGGCGCTGCA ATTCTGCGCC
CTGTATGTGG TGACTGTGTC CTTGCTGCTG ATGCTGCTGC AGGAGCAGAT AGTGGCCCTG
TTTGCCATGC AGGGGGAGAG CGCCGAGCTG ATCCGCTTCT TCTGTCGCTA CATCGCCGTC
TTCTTCGTCT TCTCCGGCGC TCTGTTTGTG GCGAACGCCT CCTTCAATAA CCTGGGTAAG
GCCAAGTACT CGACCCTGTT TAACGTGGGT AAGGCGACCC TAGGCACCAT TCCCTTCGTC
TATTATGGCG GCCAACTCGG GGGCGTCGAA GGTGTGTTGA TTGGCCAGGT GCTGGGAGCG
ATCCTCTTTG GCGTACTCGG AGTGTTAACC GCTTATCGTT TGGTAGATAA GGTGCAGGCG
AGTGCCGTAC CTGTGGTCAG TCAGGAGGTG CTGGACGAGG AGCTTAGCCC CAGCAGCCCC
AATCCACTCT CGTCCTCCTG CGCTCAGATG GCGCAGCTCA GCGAAGAGCA AGATTGCGAG
GAGAGCAATA GAGTGAGTGA GCTGGTCACT GGCCCGGGTC GCGACTAG
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| Protein sequence | MTTAKFVQGS IMRHILVMSS TAAIGISALF VVDLIDIFFL SLLGEQELAA AVGYAGTISF
FTTSIGIGLS IALGALVSRA VGAKEFELAK RLLLNSAVVT VLVASVVAII VTCFIPELLT
LVGATGRTGE LAAGYLYILV PSMPIICLAM ALGAALRAVG DAKLSMVSTL TGGGVNLVFD
PIFIFLLAMG IEGAALASVL ARLAVLLVAA RGVVVKHKLF GRFDLTAFKE DIKPIFAIAG
PAMMTNIATP IGNAVVTRAI AEFGDSYVAA WAVLGRLTPV AFGMIFALSG AIGPIVGQNF
GAREFARVRQ SLTKALQFCA LYVVTVSLLL MLLQEQIVAL FAMQGESAEL IRFFCRYIAV
FFVFSGALFV ANASFNNLGK AKYSTLFNVG KATLGTIPFV YYGGQLGGVE GVLIGQVLGA
ILFGVLGVLT AYRLVDKVQA SAVPVVSQEV LDEELSPSSP NPLSSSCAQM AQLSEEQDCE
ESNRVSELVT GPGRD
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