| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1454 |
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| Symbol | |
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| ID | 4924276 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1675723 |
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| End bp | 1677048 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640163008 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001093580 |
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| Protein GI | 127512383 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAACTA ATGCGCTCGA CCCATCTGCT CTTGAGCCCT CTGCGCCATC GGCCCTGTCG
CTGTCGACGA CCGATTTTAG TCAGTTAAAT CTGGTCAAGG CGCTACAGGC CAGACTGCAT
CATCTCGGTT ATCAGCAGGC CACGCCGATT CAGGCCAAGG CGATCCCCGC CATCTTGGCC
GGTCGCGATC TGCTGGCCGG TGCCAAGACA GGTTCGGGTA AGACCGCTGC CTTCGCGCTG
CCCTTGTTGC AGAAGCTGGT GGGACAGAGA GCCGGTGGCG GCAATCATGT TGGCGCCCTG
GTGTTGGTGC CGACCCGTGA GCTTGCCCAG CAGGTGGCCG ACAGCTTCAT CAGCTATGGC
GCCGAGCTTG CGCCAAGAGC CAAGGTAATC GCCGTGTTTG GTGGCGTCTC GGTGAACAGC
CAGATGTTGG CCCTGCGTGG CGGCGCCGAT ATTCTGGTGG CGACCCCGGG CCGTCTGCTG
GACCTGCTCG GCAGCAATGC CGTTAAGCTC TCTCAGCTCA AGGCCTTAGT GCTCGACGAA
GCCGATCGCA TGTTAAATCT GGGCTTCACC GAGGAGCTCG GTGAGATCCT CAAACAACTG
CCCGACCAAA AACAGACCCT GCTGTTCTCG GCAACCTTCC CCGAAGAGGT GCTTAGCCTC
ACCGCCAAGC TGCTGACCGA CCCTGTCGAG ATCCAGATGC AGGAGGCGCA GAGCGCAGAT
ATCGAGCAGC GCGTCTACAC CGTTAACCGT AGCAACAAGA CGGCGCTGCT TGCCGAGCTT
ATCAAGGTGC GTCAGTGGCG ACAGGTGCTG GTATTCGCCA GCGCCAAGCG CAGCTGCGAT
CATTTAGCGC AGAAGCTGGA GAAGCGCGGC ATCAGCGCCC AGGTCTTCCA TGGTGACAAG
GCCCAGGGCG CCCGTAGTCG TGTGCTCGAT GGCTTCAAGA ACGGTGAAAT TACCGTGCTG
ATCGCTACCG ACATCGCGGC CCGTGGCATC GACATCGACA AGCTACCCGT GGTGATCAAC
TTCGAATTGC CAAGAAGCCC CGCCGACTAT CTGCACCGTA TCGGTCGTAG TGGCCGCGCC
GGTGAGACAG GTGAGGCCAT CTCTCTCATC AGCCACGACG AGTATCATCA TTTCAAGGTG
ATCGAGAAGA AGAACAAGCT GCGCCTGCCA AGGGAGCAGT ATCCTGGCTT CGAGGCCGAC
GCCGAGGCGC CGCTGGATTG TCCATCACGT CAGGATAAGC CTATGGCGAA ACCCGAAGGC
ACGGGTAAGA AAAAACGTAA AAAGTTACCC AAGATCAATG ACGCGATCTG GAAGCGTCCC
TCATAG
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| Protein sequence | MTTNALDPSA LEPSAPSALS LSTTDFSQLN LVKALQARLH HLGYQQATPI QAKAIPAILA
GRDLLAGAKT GSGKTAAFAL PLLQKLVGQR AGGGNHVGAL VLVPTRELAQ QVADSFISYG
AELAPRAKVI AVFGGVSVNS QMLALRGGAD ILVATPGRLL DLLGSNAVKL SQLKALVLDE
ADRMLNLGFT EELGEILKQL PDQKQTLLFS ATFPEEVLSL TAKLLTDPVE IQMQEAQSAD
IEQRVYTVNR SNKTALLAEL IKVRQWRQVL VFASAKRSCD HLAQKLEKRG ISAQVFHGDK
AQGARSRVLD GFKNGEITVL IATDIAARGI DIDKLPVVIN FELPRSPADY LHRIGRSGRA
GETGEAISLI SHDEYHHFKV IEKKNKLRLP REQYPGFEAD AEAPLDCPSR QDKPMAKPEG
TGKKKRKKLP KINDAIWKRP S
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