| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1440 |
|---|
| Symbol | |
|---|
| ID | 4924364 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 1654969 |
|---|
| End bp | 1655859 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640162979 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001093566 |
|---|
| Protein GI | 127512369 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATATCA AACAGCTTAG GCAGTTCGAG GCGCTGGCGA CCAAGGGTAG CTTTACCCTG
GCGGCCAAAC AGCTCAACCT CGCCCAGCCC GCCCTGAGTC AGGGGATAAA ACGCCTCGAA
GAATCCCTCG GGGTCACGCT TGTCAACCGT AACAAACATT ATCGCGGTCA GGATGGCAGC
CGCCTCACCC TCACCGCCGA AGGCGAGGCG CTGGCGCAAC ATGCCAGGCT GATCCTCAAG
CAGGTCAAAC AGGCCGAGGC CCATATTAAA TCCATGGCCA ACCTCACCAA GGGCGAGGTG
CGCATCGCGG TGCCCGGCAT GCTGGGCTCC TACTACCTGC CCTCTCGCTT GATGGCCTTC
AGGCACAGGT ATCCGGATCT CAAGCTCTCC CTGTTCGAGG GCGGTACCCG AGACAGCCTG
CGCATGTTGC AAAACGAAGA GGTGGATATC GCCATCATCA CAGGCCAGGA TCTGCAGCCT
AATTTCGACA GTCATCTGCT GCTCAGAGAG CAGATGGTGG TGGCCGTTGG AGAAGATCAC
CCCTTGGCGG AGCACAAAGA GATCACCCTG GAGCAGTTTT TCGAGCAGGA GCTGGTGATG
TTTAAACCCG GCTATTTTCA CCGCGAGTGG ATGCTGTCTC AGGCCAAGGC ACTGGATCTC
GAGGTCAATA TCGCCTTCGA AACTAACCTT ATCAACCTGA TCAAGCAGGT GGTCGCCCAG
GGGTTTGCCA TTACCAGTGT GCTGGAGATG GTGATAGAAG CCAGAGATCC TATCCGCGCC
ATCCCCTTCT CACCTGCGGT GCATCTGGAT CTGCATATTG CCTGGAATAG AGAACGCCCC
ATCGGCCTTG CCGACAGGGC GTTTGTCGAA TTCTTGATGA ATAACCCTTA G
|
|---|
| Protein sequence | MDIKQLRQFE ALATKGSFTL AAKQLNLAQP ALSQGIKRLE ESLGVTLVNR NKHYRGQDGS
RLTLTAEGEA LAQHARLILK QVKQAEAHIK SMANLTKGEV RIAVPGMLGS YYLPSRLMAF
RHRYPDLKLS LFEGGTRDSL RMLQNEEVDI AIITGQDLQP NFDSHLLLRE QMVVAVGEDH
PLAEHKEITL EQFFEQELVM FKPGYFHREW MLSQAKALDL EVNIAFETNL INLIKQVVAQ
GFAITSVLEM VIEARDPIRA IPFSPAVHLD LHIAWNRERP IGLADRAFVE FLMNNP
|
|---|
| |