| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1387 |
|---|
| Symbol | |
|---|
| ID | 4923672 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1596979 |
|---|
| End bp | 1598088 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640162928 |
|---|
| Product | chemotaxis-specific methylesterase |
|---|
| Protein accession | YP_001093515 |
|---|
| Protein GI | 127512318 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2201] Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.925745 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.179203 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATAA AAGTATTAGT TGTCGATGAT TCAAGCTTTT TTCGTCGCCG AGTCAGTGAG
ATTGTCACCA AGGATGCGGA GTTAGAGGTC ATAGGCACGG CGTCTAATGG CGCCGAGGCG
GTCAAGTTGG CGCAGCAGTT AAAGCCACAA GTTATCACCA TGGATATTGA GATGCCAGTG
ATGGATGGCA TCAGCGCCGT GCGTGAGATC ATGGCGAAGT GTCCGACCCC CATCTTGATG
TTCTCATCCC TTACCCACGA CGGCGCCAAG GCAACCCTGG ATGCCCTGGA AGCGGGTGCG
TTAGATTTTC TTCCTAAGCG ATTTGAAGAT ATTGCCACCA ACAAGGATGA GGCGATCGCT
CTGTTGCAGC AGCGCATCAA GGCGCTGGGC CGCCGCCGTG TGTTCCGCCC CATATTGCCA
AGAAGTGTAC CACCAAAGCC TGCGACAACA ACTGCTTCTA CGACGCCGAC AAGAGAGATG
GCGCAGCGTC CTGCAACGCG TCCGAGCGCG CCTGTTACCC GCGCCAGCGG TAAGAGATAT
AAGCTTTTAT TGATCGGCAC CTCAACCGGC GGCCCCGTTG CGCTGCAGCG GATATTGACC
AAGCTGCCGG CGAACTATCC TCATCCTATT TTGCTTATCC AGCATATGCC GGCAGCCTTT
ACGCCCGCCT TCGCCACGCG CTTAAATGGC CTGTGTGCCA TCGAGGTGAA AGAGGCGCAA
AATGGCGATC AGCTCAGGGC AGGCTGCGCC TACCTGGCAC CCGGTGGCAT GCAGATGATG
TTAGAGCGTG GCGGCAGCTT TGGACGCATC AAGATAGTGG CCGGTAGCAT GGATATGAAT
TACAAGCCCT GTGTCGACAT TACCTTTGCC TCGGCCTCAA AGCTGAGTGG CGGTGAGACC
CTGGCCGTGG TATTGACTGG TATGGGCGCC GATGGCCGCG AAGGGGCCAG GATGCTTAAG
AATGTCGGGG CGACTATCTG GGCTCAAGAT GAGGCCAGCT GCGTCGTTTA CGGCATGCCA
CAGGCGGTGA CCGCCGCCGG GATCTCCAGT CAGTCGATAG CGCTCGATGA TATGGCAGAG
GCCATCATTC GCGAGAGCGG ACGTGGCTAG
|
|---|
| Protein sequence | MAIKVLVVDD SSFFRRRVSE IVTKDAELEV IGTASNGAEA VKLAQQLKPQ VITMDIEMPV
MDGISAVREI MAKCPTPILM FSSLTHDGAK ATLDALEAGA LDFLPKRFED IATNKDEAIA
LLQQRIKALG RRRVFRPILP RSVPPKPATT TASTTPTREM AQRPATRPSA PVTRASGKRY
KLLLIGTSTG GPVALQRILT KLPANYPHPI LLIQHMPAAF TPAFATRLNG LCAIEVKEAQ
NGDQLRAGCA YLAPGGMQMM LERGGSFGRI KIVAGSMDMN YKPCVDITFA SASKLSGGET
LAVVLTGMGA DGREGARMLK NVGATIWAQD EASCVVYGMP QAVTAAGISS QSIALDDMAE
AIIRESGRG
|
|---|
| |