| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1312 |
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| Symbol | |
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| ID | 4920479 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1523812 |
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| End bp | 1524927 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640162852 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001093440 |
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| Protein GI | 127512243 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATCT TTACCGCCAA ATCCCTCGCC AGGGTGTTGT TATGGAGCAG CCTTAGCCTC
GCGGCCAGCG GCTGCCAACA GGAAGAGTCC ACCAGCGCCC CCGACAGCGA ACATTTCCCC
AAGGTCTCCA GTCAGCGTCT GATCCGCTCG ACCAACTATG ACACAGAGCA GGTATTCACC
GGTAGCATAC GCGCGGGCAA TACCACGGCT ATCGGCTTCG AGCTGGCGGG TAAGATCAAA
CACCTGGCGG TCGACAGTGG TAATCATGTC AAACAGGGTG ACCTACTAGC CCAGCTGGAC
ACCTCCTTGC TTGAAGCCGA GAAGCGCGAG CTGCAGGCAA GCCTTGCGCA AAACCGCGCC
GACCGAGAGC TGGCCCAGAG CACCCTCAAG CGCAGCCAGG CACTGAAACA ACAGGGCTAC
GCCTCGGCCC AGCAACTGGA CGAACTCAAG GGACAACTCA GCAGCCTGCA AGCCGCCGAG
CAACGTCTGC GCGCCGCGAT TGAGGCCAAC GCGCTGCGGA TCGCCAAGTC CACCCTAGTC
GCGCCATTTG ATGGTATTAT CGCCAAACGT AACAATAACT TAGGTGAAGT GGTCGCCCTG
GGCGCACCGC TATTTACCCT GATCCAACAC AACAATCCCC AGGCCACCGT CGGCGTGCCC
GTAGGACTCG CGCAGAGTTT GCAAGACAGC CAGCAGCTGA CCCTGACGGT AAAAGAGACC
CCTTATCTAG CCACCGTGGC CGGCATTGGC GCCGAGGTCA ATCCTGTGAC GCGTACCGTG
CCGGTGCGCC TGACCCTGCC TACCGATGCC AAGGTGATCA ACGGCGAGCT GGCCTACCTG
CATTACAACA AGACAGTCGA CACCGCCGGT TTCTGGGTGC CCATCTCCTC GCTCACCGAC
GGCCTGCGCG GCCTGTGGAA CCTGTATGTG CTGGTCGAAC AACAGCCGGA TCAATACCTT
ATCGAGCGGC GCGACATAGA GATCCTCTAC ACCCGTGGCG ATCAGGCCTT CATCCAGGGG
GCGATAAGCG AAGATGAACG CTTCGTCACT CAGGGCCTGC ACAAGGTGGT GGTGGGCGAG
CGCGTCATGC TCAACACCCA AGTGGCGACG AGGTAA
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| Protein sequence | MTIFTAKSLA RVLLWSSLSL AASGCQQEES TSAPDSEHFP KVSSQRLIRS TNYDTEQVFT
GSIRAGNTTA IGFELAGKIK HLAVDSGNHV KQGDLLAQLD TSLLEAEKRE LQASLAQNRA
DRELAQSTLK RSQALKQQGY ASAQQLDELK GQLSSLQAAE QRLRAAIEAN ALRIAKSTLV
APFDGIIAKR NNNLGEVVAL GAPLFTLIQH NNPQATVGVP VGLAQSLQDS QQLTLTVKET
PYLATVAGIG AEVNPVTRTV PVRLTLPTDA KVINGELAYL HYNKTVDTAG FWVPISSLTD
GLRGLWNLYV LVEQQPDQYL IERRDIEILY TRGDQAFIQG AISEDERFVT QGLHKVVVGE
RVMLNTQVAT R
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