| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1274 |
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| Symbol | |
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| ID | 4920502 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1471188 |
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| End bp | 1472969 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640162815 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001093403 |
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| Protein GI | 127512206 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.24806 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATTACC TCAGACTATT TTTGGCTTGT GTCTTTTCGA TAGCGCTTTG CGGATCTGCC
GTTGCGAGCG ATGTCGATTA TGACGCGGTT ATCGATGAGC TAAAGGCATC GTTAATTGCA
GAGCCGGCCA AGTCGTCTGA GGTAATTGCC TACCTTAAAG AGAATACCCA GCACTTGAGC
CGCGAACAGA GGGCTCGGGT GTTGACCCTG GAGAGTAACA AGGAGATGTA TAACGGTTCC
TACGAACGCG CCTTTAACCT ACTCACTCAG GCCGAACAGC TGAGCCACTC TCCCGAAACT
CAAAATTCCA TCTATCTGTA TCAGGCCACA GCGCTGATCG CCATGAAGAA CTATCAGGGC
GCCTTGGATG CGATGGCCAA GAATCTCGAT CGTATCGAGC AGATAGATGA TGTGACCATT
AAGATGACCT CTTATCTGAG GTTGGCCAAC CTCTATCTGG ATCTCGAAGT CTATGACGAG
GTGAAGCGCT ATGCCTCGCT GGCCTATGCC CTCAGCCGCG ACAGATCGCC GAAAGAGCAG
TGTTATGCCC AGCTGTTTTT GGCGGTAGGG GAGCTAAAGC TCTCCCACTA TCATGAGGCT
AAGCAGTTAT TTGCCGATAC CCGCACCTTC TGTAGTGAAC ATAATATTCC GCTTATTGTT
GCCATGGCCG ACAAGGGCAA GGGCACTTCA CACCTTAAGC TCGGCGAGCT TGAGCAAGCG
GAGAAGCTGT TCCTTTCAGC GCTTGCAAAG TACAAGACAT TTAAGTTTCA GTTAGAGATT
AACGATGTTA ATGCCTTGCT GGCCGAAACC TACTTGATGA AGAAAGAGGT TGAGGATGCC
AAGCAATACG CCCAGCAAGT CATACATGTT GAGGACGAGC CAAGCGTGCT CAACGCTAAG
AAACGCGCCT ATAAGATGAT GGCCGATGCC TTGGCTTTAG AGGGAAGCTA CCAGGAGGCC
TATCATTATC TGGACGAGTA TATGCAGCTC AGTGAGGCCG ATATCGACGA GACCAAGGCA
AAAGCCTATG CGTATCAGAT GGCTAAGTTT GAGAATGCCG AGAAGGCCCG TGAAATTAAG
ATGCTCAATC AGGATAGGGC GCTCTATACC GCGCAGCAAA AGGTAGTTGA GCTGGAAAGA
TACAACGAGA GTATGGCGCT GATGATTGCC ATAGGTTGCT CTATCTGTCT CATTATTTTT
GGTGCTTCTA TGTTTGTGCA GAAGCGCAAA TATAAGCGCA TCTCTCAGCG GGATCCTTTG
ACCGGAGTAT TAAACCGAGG CACGGGGCAA GACTTTGCCG AAAATCTCTT CGTCGATGTC
TTGGCTCATC GCAGCATGTT TAGTGTGGTG ATGTTCGACT TAGATCACTT CAAGGCGATC
AACGATACCT ATGGCCATAG CGCCGGAGAT TGGGCATTGC GGCGAGTAGT CGATGCCGTG
ACGCCAAGCC TCAAGAGCAG GGATCTGTTT GTGCGCATGG GCGGTGAAGA GTTTGCGCTC
TTCTTGCCGT ACACGGATGA GCAGGCGGCC CTCAAGATAG CCAAGCAGTG TCGCGTGGCT
ATAGAGGCGA TTCAGACACG GCCTCACTAT AGCGACCTGA GCATTACCGC CAGTTTCGGT
GTCTGCACCA GTGTGGAGGA GGATCTTAGC CTGGATCCAC TCATGAAGCG GGTCGATATC
GCCATGTATC AGGCCAAGGG CAATGGCCGT AACTGCGTGG TCATGTACCG CCCAAGCATG
GAGTCTACGC CCGACACCCC CATTAATGCG GTGAATGCTT AG
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| Protein sequence | MYYLRLFLAC VFSIALCGSA VASDVDYDAV IDELKASLIA EPAKSSEVIA YLKENTQHLS
REQRARVLTL ESNKEMYNGS YERAFNLLTQ AEQLSHSPET QNSIYLYQAT ALIAMKNYQG
ALDAMAKNLD RIEQIDDVTI KMTSYLRLAN LYLDLEVYDE VKRYASLAYA LSRDRSPKEQ
CYAQLFLAVG ELKLSHYHEA KQLFADTRTF CSEHNIPLIV AMADKGKGTS HLKLGELEQA
EKLFLSALAK YKTFKFQLEI NDVNALLAET YLMKKEVEDA KQYAQQVIHV EDEPSVLNAK
KRAYKMMADA LALEGSYQEA YHYLDEYMQL SEADIDETKA KAYAYQMAKF ENAEKAREIK
MLNQDRALYT AQQKVVELER YNESMALMIA IGCSICLIIF GASMFVQKRK YKRISQRDPL
TGVLNRGTGQ DFAENLFVDV LAHRSMFSVV MFDLDHFKAI NDTYGHSAGD WALRRVVDAV
TPSLKSRDLF VRMGGEEFAL FLPYTDEQAA LKIAKQCRVA IEAIQTRPHY SDLSITASFG
VCTSVEEDLS LDPLMKRVDI AMYQAKGNGR NCVVMYRPSM ESTPDTPINA VNA
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