Gene Shew_1267 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1267 
Symbol 
ID4920880 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1465559 
End bp1466788 
Gene Length1230 bp 
Protein Length409 aa 
Translation table11 
GC content44% 
IMG OID640162807 
Productphage integrase family protein 
Protein accessionYP_001093396 
Protein GI127512199 
COG category[L] Replication, recombination and repair 
COG ID[COG0582] Integrase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0699075 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGTCA TTACAACTCC TCTTACCAAT ACTCAAATCA AAAACCAAAA ACCTGGTCCG 
AAGGATATCG TTCTATCTGA TGGAGGCGGA TTGCAGCTTC GAGTGAGGAC TAACGGCTCA
AAGCTATGGA ACTATAACTA CTATCATCCA GTCACTAAAA AACGAGTCAA CATTGGGATC
GGTCCATACC CTGATATTCC ATTAGCTAAA GCCCGCGAAA TTGCTTTGGA ATACCGACAA
CTAGTAGCCT GCGGTGTTGA CCCCAAAAGT AAGCGAGAAC AAGAATCATT AAAATTAAAG
CAAGAGGTTC TATATACCCT TAAGAATGTT GCTGCCGAGT GGTTAGAGAT CAAAAAAAGC
GAGGTGACTA AAAGCCATGC AGCCAAAACA TGGAGCTCAT TAGAAAGCCA TGTATTCCCT
GAACTAGGAG ATACACCGCT AAACAAAATA ACAGCCCCAC TGGTGATAAA AGTTTTTCGC
CCAATTGAAG CAAAAGGCAG CTTAGAAACC ATAAAGCGAC TTAGCCAAAG GCTAAATGAG
ATTATGAACT TCGGAGTTAA CTGTGGCTAT ATAGATTCAA ATCCATTAGT TGGTATTCGT
GCGGCATTTA AAAAACCAAA AAAAGAAAGT ATGGCCACAC TAACTCCATC AGAACTACCA
CTTCTTATGC GCCACCTCTC TCAAGCATCA ATTAAGCGTG TCACTCGTTG CCTTATCGAA
TGGCAATTAC ACACAATGAC ACGCCCTTCG GAAGCAGCTA CTGCCCGCTG GGATGAATTA
GATCTTGATA ATTTAACTTG GACAATTCCC GCTGAAAAAA TGAAAAGGCG CCGTGAGCAT
GTTATTCCAC TTACTCAGCA GATGCTAGGC ATCCTTGACG CGATAAAACC CATAAGTGGG
CACAGAGATT ACATATTCCC TGCAGATAGA GATCCTAAGT CGCACTGCAA CACGCAAACA
GCCAATGTTG CATTAAAACG TATGGGGCTA AAAGGAAAAT TGGTAAGCCA TGGCATGCGA
GCACTCGCTA GCACCACGCT AAACGAGCAA GGCTTTGAAT CTGACTTAAT TGAGGCTGCA
TTATCTCACG TAGATGCAAA TCAGGTTCGG GCGGCATATA ACCGCTCCGA TTTCCTGGAG
CGGCGCCGTC CAATGATGAG CTGGTGGAGC AAGCATATTG AAGAGGCTTC CCAAGGAAAT
TTGTCCGTTT CATGCCGGCG AGTCAGTTGA
 
Protein sequence
MAVITTPLTN TQIKNQKPGP KDIVLSDGGG LQLRVRTNGS KLWNYNYYHP VTKKRVNIGI 
GPYPDIPLAK AREIALEYRQ LVACGVDPKS KREQESLKLK QEVLYTLKNV AAEWLEIKKS
EVTKSHAAKT WSSLESHVFP ELGDTPLNKI TAPLVIKVFR PIEAKGSLET IKRLSQRLNE
IMNFGVNCGY IDSNPLVGIR AAFKKPKKES MATLTPSELP LLMRHLSQAS IKRVTRCLIE
WQLHTMTRPS EAATARWDEL DLDNLTWTIP AEKMKRRREH VIPLTQQMLG ILDAIKPISG
HRDYIFPADR DPKSHCNTQT ANVALKRMGL KGKLVSHGMR ALASTTLNEQ GFESDLIEAA
LSHVDANQVR AAYNRSDFLE RRRPMMSWWS KHIEEASQGN LSVSCRRVS