| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1252 |
|---|
| Symbol | |
|---|
| ID | 4924025 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1450808 |
|---|
| End bp | 1451473 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640162792 |
|---|
| Product | transposase |
|---|
| Protein accession | YP_001093381 |
|---|
| Protein GI | 127512184 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0590866 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAACAC GTTATCCTGC TAACACTAAT CTTGTCGTGA TCGATAATGG TCAATATCAA
GGATGGAAAG TCAATTCTAG ACCACTAAGT AAGCAATACT TGGATGCAAT CCTCCGAACC
ATGCATGCCG CTCTTGATGA ACATCCTCGT ACCTTAATGG TACGATTTGA TTTGCATTTG
CCGCTTCTCA ATTTCGATGA TTCACCGAGG TTTTATGATT CAACGGTCAT CAGTAAATTT
TTCAAGTCAC TTAATGCAAA AATCCAACAT GATAGAGCAG TCAAACTACG AGAGGGAAAG
CGTACACATC CATGCACGTT ACGATATGTA TGGGTGAAGG AATGTCGGGA GGCTGCTACG
GACCATTATC ATGTGGCGAT TTTTCTCAAT AACGATGCTT ACTGCCATTT GGGAAGTTAC
AGTAATGGTG GCAACAATCT AAGAGCTAGA ATTGTTGAGG CATGGGCTAG TGCTATTGGA
GTTGATGAGT TCGTTGCAGA AGATAAAGTT CATTGCCCTA GTAAACCATT GTATTACATA
AATCGTAATT CGGTTGGTTT TACTACAAGT TTTGCTAAAG CTTTTGAACG ATTGAGTTAT
TTAGCCAAGC TTGAGACTAA GCACTATGGT GATAACACTC GTTCTTTTGG GTGTAGTCAA
CGTTAG
|
|---|
| Protein sequence | MRTRYPANTN LVVIDNGQYQ GWKVNSRPLS KQYLDAILRT MHAALDEHPR TLMVRFDLHL
PLLNFDDSPR FYDSTVISKF FKSLNAKIQH DRAVKLREGK RTHPCTLRYV WVKECREAAT
DHYHVAIFLN NDAYCHLGSY SNGGNNLRAR IVEAWASAIG VDEFVAEDKV HCPSKPLYYI
NRNSVGFTTS FAKAFERLSY LAKLETKHYG DNTRSFGCSQ R
|
|---|
| |