| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1224 |
|---|
| Symbol | |
|---|
| ID | 4924342 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 1421398 |
|---|
| End bp | 1422648 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640162764 |
|---|
| Product | sodium:dicarboxylate symporter |
|---|
| Protein accession | YP_001093353 |
|---|
| Protein GI | 127512156 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1301] Na+/H+-dicarboxylate symporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGCAAA CAATTAAACA GATCCCCTTT TGGCAGAAGG TTCTCGCCGG TTTCATCTTA
GGGGTTGGCC TGGGCGTTGT CCTGGGCGAG CAGGCAACCC AACTCAAGCC GCTGGGCGAC
CTCTTTATCG CGGCAATCAA GATGTTGGTT GCGCCGCTGA TCTTCTGCGC CATCGTCGTC
AGCATCACCT CTCTGGGTAA TGATGTTAGC CTCAAGCGCC TGAGTATCAA AACCCTGGCC
ATGTTCATGC TGACCGGCAC CATAGCCTCG CTTATCGGCC TGGCGATCGG CTCGCTGATC
GACATGGGCG GTTCACTGGA GCTGGCCACC ACAGAGGTGC GCGAGCGTAA CGTGCCAGGC
TTTGCACAGG TACTGCTGGA CATGATCCCG GTCAATCCTT TTGCCTCCCT AGCCGAAGGC
AAGGTGCTAC AGATCATCGT CTTCGCCGCC TTAGTCGGTA TCGCCATCAA CAAGATTGGC
GAGAAGGCCG AGCCGCTCAA GCGCACCATA GAAGCGGGCG CAGAGGTGAT GTTCCAGCTG
ACCCGCATGG TACTGCAACT GACACCTATC GGTGTATTCG GCCTGATGGC CTGGGTAGTA
GGTGAATATG GCCTCTCAAC CCTGTTGCCG CTGGGCAAGT TTATTGGCGC CATCTATATC
GCCGCACTGA TCCACATGGT CTTCGTCTAT GGCGGCCTGG TCAGATTTGG CGCCGGCCTG
AGCGCGGTGC AGTTCTTCAG AAAGGCGATG CCAGCCCAGC TGGTTGCCTT CACCACGGCG
TCCAGCTTCG GCACCCTGCC CGCCAGCACC CGTGCCACTG AGACCATGGG CGTATCGAAG
AAATATGGCG CCTTCGTGTT GCCACTAGGC GCCACCATGA ATATGGACGG CTGTGGCGGT
ATCTATCCGG CCATCGCGGC CATCTTCATC GCACAGATCT ATGGTATCCC GCTGGAAATG
ACCGACTACA TGCTGATCGC CGTTACCGCC ACTGTGGCCT CTGTGGGTAC AGCAGGCGTA
CCCGGTAGCG CCATGGTGAT GCTCTCTGTC ACCCTGGGCG TGGTAGGTTT GCCCCTCGAA
GGCATCGCCT TTATCGCCTC AATCGACAGG GTGATCGACA TGATACGTAC CGCGACTAAC
GTGACCGGCG ACATGATGAC GGCCGTGGTG GTGGGCAAGT CTGAGGGTCA GCTCGACCAG
GAGCAGTTCT ATCGCAATGA AGAGAGCGAC GCCCCTGAGG TTGCCAGCTA A
|
|---|
| Protein sequence | MWQTIKQIPF WQKVLAGFIL GVGLGVVLGE QATQLKPLGD LFIAAIKMLV APLIFCAIVV
SITSLGNDVS LKRLSIKTLA MFMLTGTIAS LIGLAIGSLI DMGGSLELAT TEVRERNVPG
FAQVLLDMIP VNPFASLAEG KVLQIIVFAA LVGIAINKIG EKAEPLKRTI EAGAEVMFQL
TRMVLQLTPI GVFGLMAWVV GEYGLSTLLP LGKFIGAIYI AALIHMVFVY GGLVRFGAGL
SAVQFFRKAM PAQLVAFTTA SSFGTLPAST RATETMGVSK KYGAFVLPLG ATMNMDGCGG
IYPAIAAIFI AQIYGIPLEM TDYMLIAVTA TVASVGTAGV PGSAMVMLSV TLGVVGLPLE
GIAFIASIDR VIDMIRTATN VTGDMMTAVV VGKSEGQLDQ EQFYRNEESD APEVAS
|
|---|
| |