| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1177 |
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| Symbol | |
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| ID | 4922419 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1361267 |
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| End bp | 1362520 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640162711 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001093306 |
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| Protein GI | 127512109 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAAAA AATACCTGTA CATTCCCCTT GGCGTGCTGG CGCTAGCCGC CTTGCTCACC
TTTGCCGTTG CTGCCAATCA GGCCAAGAGC CAGTCGCCAA CATATCAGCC CCAAGTTGTA
AAGGGCAAAG CTGCTAACGG CAAAGCTGCT AATGCCAACA CAGCTAATGT CAAAGCTGGG
GCCAGAGCCG TGCCGATTGC CAGTGCCCGG GTCGAGGCCC ATGAAGTGGC TCAGCATCTC
TCTTTGGTCG GCAAGCTTGC CGCCAATCGC TCGGTGCAGA TAGCTGCCGA GGTATCGGGT
AAGGTGCAGG CGATCAACTT AAGCGATAAT CAGGCGGTGT CTCAGGGGCA GGTATTGGTG
CATCTCGAAG ATGCCAAGGC CAAGGCAAAT CTTGCAGAGG CCAAGGCCTA TCTGAACGAT
GAGCGGCGCA AGTTAGGCGA GTACAAGCGG CTGATAAAAC AGCACGCTAT TACTCAGACC
GAGATAGATG CTCAGCTGGC CAGCGTCGAT ATCGCCGAGG CCAGGCTGCA GGCCGCCCAG
GCGGACCTGG ATTATCACAC CCTCAAGGCC CCCTTCGACG GTGTGATTGG GCTGGTGGAC
TTTAGTCTGG GCAAGCTGGT GAGCGTGGGC AGCGAGCTGG TAAGCCTGGA CGATCTCTCC
AGCATGCGTC TGGATCTGCA GATCCCCGAG CGTTATCTGT CGCAGATCTA CCTAGGCATG
CCTGTGGTGG CCAGCAGCAG TGCCTGGCCA GGCGAGCAGT TTCATGGTCA GGTGGTGGCC
ATGGCGCCGC GGATCAACTC CGAGACCCTC AATCTTAAGG TGAGGGTGAA TTTCGACAAC
CCCAGCCTTC AGCTCAGGCC CGGCATGTTG ATCTCGGCGC GGCTTGATTT TGCCCCTGTG
ACTCAGGCGG TAGTGCCGGT TCAGGCGCTG GAATACTCAG GCACCAAACG TTTCGTCTAT
GTGATCGACA GCGACAATAT CGCCCGCCGC ACTCAGGTGA CCCTGGGGGC GCGTATCGAC
GATCAGGTGC TGATCGATGA TGGCTTATCC TTGGGCGACA GAATCGTGGT CAAGGGGCTG
GTTAACATGC GTGATGGCAT CAAGGTGGAA GATGTTGAAA CCGGCCAGCT CGCCGAGGGG
CTGGGAGGCA GGCGTTTGAC TCAGACCCAG ACCCAGACTC AGACTCAGGT CCAGACTCAG
GTCCAGACTC AGGTCCAGAC GGGCGAGACT GAAACCGCGC GGGGGCAGAG CTAA
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| Protein sequence | MDKKYLYIPL GVLALAALLT FAVAANQAKS QSPTYQPQVV KGKAANGKAA NANTANVKAG
ARAVPIASAR VEAHEVAQHL SLVGKLAANR SVQIAAEVSG KVQAINLSDN QAVSQGQVLV
HLEDAKAKAN LAEAKAYLND ERRKLGEYKR LIKQHAITQT EIDAQLASVD IAEARLQAAQ
ADLDYHTLKA PFDGVIGLVD FSLGKLVSVG SELVSLDDLS SMRLDLQIPE RYLSQIYLGM
PVVASSSAWP GEQFHGQVVA MAPRINSETL NLKVRVNFDN PSLQLRPGML ISARLDFAPV
TQAVVPVQAL EYSGTKRFVY VIDSDNIARR TQVTLGARID DQVLIDDGLS LGDRIVVKGL
VNMRDGIKVE DVETGQLAEG LGGRRLTQTQ TQTQTQVQTQ VQTQVQTGET ETARGQS
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