| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1149 |
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| Symbol | |
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| ID | 4921831 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1323548 |
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| End bp | 1324423 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640162684 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001093279 |
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| Protein GI | 127512082 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.229306 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0812943 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGACAC TCGAGCAGCT ACAACTCTTT CTGGCGACTG TGGAAACCGG TTCCTTCTCG
GCGGCCGCCC GGCGCCTCAA CAAGGTGCAA TCTGCGGTGA GCCAGCAGAT CATCAACATG
GAGATAGACT GCGACAAGCA GCTGTTCGAC CGCAGTGGCC GCTATCCTGT GCTCACCCCG
GCCGGTCAGA CCCTGCTGCC CCAGGTCAAG GCGGTGATCG CTCAGCACCT AAGGCTGCAA
TCCCTCATAA GCTCGCTGGA CGCCGGCCTG CCGCAACAGT TTCGTCTGGC GATCGATGAA
GGGGTACCCT TCTCTGAGCT CAGCCAGCAC CTGAACCTGT TTGCCGACAA ATACCCCCTT
ATGCAGCTCG AGCTGCGCAT GCTGCCCAGC AAGGAGATCA TCGAGCAGGT GAGGCAGCAA
AACGTCGACA TGGGGGTGAT CTTCAGCGAG GAGATCTATC CCCAGCAGAT AGACTTCGAA
TCCTTGGGGT CGGTGAAGTT TGAGCCTGTG GTCAGCCCTA ATCACCCACT GGCCAAGGCG
GAGACCAACA ACCTCGACCA GTTGAAGCTT CACCGTCAAC TCACCATAGG CAGCAAGCAG
ACGCAGCAAT CGAGCTTTCA GGCAGAGCAC TCGCCTCAGC TCTGGCTGGC CGACAGCTAC
TACGCCCTGC TAGATCTGGC CAAGTCAGGC TTCGGCTGGA CACTACTGCC TGAACATTTA
GTGCAGGACG CCCTGGCCCA GGGGCAGCTG TGCCCGATTC CGCTGAATAT GGAACAGATG
GGCTGGATTG CCAACGTGGA TCTGATCCAG CACAGCAGCG TCAACCAGGA GGTGAGTCAG
GTATTCCGCC AAATCTTAAG CGCCGCCATC GCCTAA
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| Protein sequence | MPTLEQLQLF LATVETGSFS AAARRLNKVQ SAVSQQIINM EIDCDKQLFD RSGRYPVLTP
AGQTLLPQVK AVIAQHLRLQ SLISSLDAGL PQQFRLAIDE GVPFSELSQH LNLFADKYPL
MQLELRMLPS KEIIEQVRQQ NVDMGVIFSE EIYPQQIDFE SLGSVKFEPV VSPNHPLAKA
ETNNLDQLKL HRQLTIGSKQ TQQSSFQAEH SPQLWLADSY YALLDLAKSG FGWTLLPEHL
VQDALAQGQL CPIPLNMEQM GWIANVDLIQ HSSVNQEVSQ VFRQILSAAI A
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