| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1142 |
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| Symbol | |
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| ID | 4922617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1317630 |
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| End bp | 1319018 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640162677 |
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| Product | putative transcriptional regulator |
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| Protein accession | YP_001093272 |
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| Protein GI | 127512075 |
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| COG category | [K] Transcription |
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| COG ID | [COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0435134 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGTAA GAAATATTGA CCAGGACGAA CTGGATGCGC TCCTTGCCTT AAATGAAGAT
CACTTTAATG ACGTAAAAAG CAAAAGGATT AATCCAGGCA AGCTTCAAGA GACATTTGTT
GCTTTTGCGA ACTCTGATGG CGGGGATTTA TACATAGGTA TAGAAGATAA ATCTGAAACG
GGTGAGCGGG TTATAGGGTT CGGAGAGCAA GAGGATGCGA ATGCTCTAAT ATCGACTCTT
TTGGAAGAGA CCAATCCCGC TGTTGAAAAT GTCGTTATTG AGTTTTTAGA AGTTGAAGGC
AAGGGGCTGA TTTTACATTT TGGCATCCCC AAAAGCCCTA AAGTTCACTA CACAGCTTCT
GGAGATTGTT ACATTAGAAT TAATGCAGCT AAAAGAAAAA TCAAAGGAGA CCGTATTACT
CAGCTAGGCT ATTCAAAAGG TGCAGAACCA TATGAAAGAA GAGCTCTAGA TAACGTTGAT
ATAGAAGATA TTTCAGAGGG TGAATTGCTC TCTAGGTACA TGGAGCGCGT TGGCACCCAT
TTGCTACCAG AAGCTTTCTT AAGAAAACAG CGCTTACTAA CAAAAAAAGA TGGTGAAAGA
GTTCCGAATG TTGGTTCCGT TCTGTTATTT GATGATGAGC CCCAAGCTAC CTTAGAGAAA
CGGTGTGCTG TAAAGGTTTA TAGGCTAAGG ACGACTGAAA CCGAGTATAA GCGAGAGCAG
CTTGAAGAAA TGCCCGTGAC AATAAATGGC GACGTAGAAA GTGTAATTGA GAAAACCGTT
AATCAAGTTA CTAAATACAT CGATGGAGCT TCCTTTCAGG ATGCTGGCAA GATTGTAAAG
CTCAACTATC CATCAGAGGC ATTGAAGGAA ATACTCGTAA ACGCCGTTAT TCATCGAGAC
TATAGCCTTA ATGATGACAT TCATGTGCGA GTTTTTGACA ATCGAGTTGA AGTACAGAGC
CCGGGTAAGC TTCCAGGTTA CATGACACTG GAGAACCTTT ACGATGAGCG ATTTTCTAGA
AACCCCAATG TGGTTCGCAT GCTACACAAT CTTCCAAATC CGGTTAATCA CGATATTGGA
GAGGGATTAG ATACCGCCAA AAATGAGCTA AAAAAAGCCG GCCTCGTTGA CCCTATCTTT
TACGAAAAAG AAAATGCGTT TATTGTCACC ATCAAACACC AAAAAGTCGC ATCGGTAGAG
GATGTCATTC TACAGTATTT CTCTAACAAC CCTAGTTCAT CCATATCAAA TAAGCTTGTA
AGGCAACTTA GTGGTGAAGA TGATATGCAA AAAGTTAAGC TTGCCTTGCA AAAATTGAGA
GCGGCCGGTG AGATAAAGCT AGAAGATGAA AATGCATCTG CCTTTAACTA CCGGTACATC
AAAGCATAG
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| Protein sequence | MEVRNIDQDE LDALLALNED HFNDVKSKRI NPGKLQETFV AFANSDGGDL YIGIEDKSET
GERVIGFGEQ EDANALISTL LEETNPAVEN VVIEFLEVEG KGLILHFGIP KSPKVHYTAS
GDCYIRINAA KRKIKGDRIT QLGYSKGAEP YERRALDNVD IEDISEGELL SRYMERVGTH
LLPEAFLRKQ RLLTKKDGER VPNVGSVLLF DDEPQATLEK RCAVKVYRLR TTETEYKREQ
LEEMPVTING DVESVIEKTV NQVTKYIDGA SFQDAGKIVK LNYPSEALKE ILVNAVIHRD
YSLNDDIHVR VFDNRVEVQS PGKLPGYMTL ENLYDERFSR NPNVVRMLHN LPNPVNHDIG
EGLDTAKNEL KKAGLVDPIF YEKENAFIVT IKHQKVASVE DVILQYFSNN PSSSISNKLV
RQLSGEDDMQ KVKLALQKLR AAGEIKLEDE NASAFNYRYI KA
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