| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1086 |
|---|
| Symbol | |
|---|
| ID | 4921692 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1251288 |
|---|
| End bp | 1251830 |
|---|
| Gene Length | 543 bp |
|---|
| Protein Length | 180 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640162619 |
|---|
| Product | hemerythrin HHE cation binding domain-containing protein |
|---|
| Protein accession | YP_001093216 |
|---|
| Protein GI | 127512019 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3945] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00113012 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0726864 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGCGA GACTTCATAA TGACCATAAA CATATCGCGA TACTGTTAAA TATTCTTAAA
AATAAGCAGC AGCGGCTGCA ACATGGCGAG GCCGTCAACT TTAATCTGAT CCGAGATATC
GTCGAATATA TGCAGAGCTA TGCCGAGCAT AGTCATCACC CGCTCGAGGA TCTGATCAAC
GAATTCTATA TTCAGACCCA TCCCGAGGAG GCCTTGGAGA AGCAGTTGGG GGAAGAGCAC
CATAACCTGA TCGAAAGCTC AACCAGCTTG ATGTCTACCC TAAACCTTAT CTTAAGTGAC
GTCCCGGTAC AGAATGAAAC CTTGAGCCAG GCCCTGAAGG AGTATGTCGA GGCGCAGCGC
AATCACATGA TGTATGAAGA GGGTAAGTTG TTCCCCATCT GGGAGGCGGG GATGACAGAG
GCTCAGTGGC AGGAGGTGGC AGACAGATGC CAGGAGAAGT TGATCTGCGA CCCATTATTT
AGCGATGACG ACAACCTACT CTTCGAAGAG TTAAAAGAGT ATCTGGCCAA GGCCGATGAC
TAA
|
|---|
| Protein sequence | MLARLHNDHK HIAILLNILK NKQQRLQHGE AVNFNLIRDI VEYMQSYAEH SHHPLEDLIN
EFYIQTHPEE ALEKQLGEEH HNLIESSTSL MSTLNLILSD VPVQNETLSQ ALKEYVEAQR
NHMMYEEGKL FPIWEAGMTE AQWQEVADRC QEKLICDPLF SDDDNLLFEE LKEYLAKADD
|
|---|
| |