| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1015 |
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| Symbol | |
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| ID | 4922466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1174427 |
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| End bp | 1176136 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640162548 |
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| Product | Cl- channel, voltage-gated family protein |
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| Protein accession | YP_001093145 |
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| Protein GI | 127511948 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0038] Chloride channel protein EriC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.411818 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCAGCTCA GAATAAACAG CGCCATACAG CAATGCCAGA AATACCTGAA TACCGACCTC
AAAGACAAAT TGGCCCAGGC CAAGATCAGC GTGCAGCTTT GTGGCCTCGC CCTCGCCTTC
GCCCTGGTGG CCTCTGGCGT GATCATATTG TTTCGACTTC TGCTGCTGTG GCTCAACCAG
CTCACCCAGA CCCAAGAGTG GCAGTTTACT GGCAACTTAG GTGACTGGCG AGTCCTATTG
CCACTTTTAG GGGCGATCTT AATCTGGTTT GTGGCCGTTT TGGGATCCAA GCGCTATAAA
CGCATGGGGA TCGCCTACGT GATGCAGCGG ATGAAATTGC ACTACGGCAA GATCCCCCTG
CAGTCCGCGC CGGGACAGTT CTTTCAGGCG CTGTTTGCCT TGGCAACCAA CTTCTCCGTG
GGCCGTGAGG GCCCGGCCAT ACATCTGGGG GCGGTGAGCG CCAGCGTGAT GGCGGAGAAG
TTTAAGCTGC CCGACAACAG CGTGCGCATC ATGTGCGCCA GTGGCATCGC CGCCGGGATT
GCCGCCACCT TCAACGCCCC GCTGGCGGCA GTGATCTTCG TATTCGAGGT GATACTGCGC
GAATACAAGG TGCATTACTT CTTCCCCATC ATGCTCTCGG CCATCTGCGG CGCCCTCTCC
AGCCAGCTGG TGTTTGGCAA TATCCATGAA TATGACCAGA TTGGGGTAAG CCATATTCCC
CTGTCGCAAT ATCCCGTACT GGCGCTATGC GGCGTCACCC TGGGTTGTAT CGCCGCCCTG
TTTAATCACA CCCTGCTAAA AGTCACAGCT AAGGGACAGC AGCATCCCCT GATCCTGCGC
CTGCTCATCG CCGGGCTTAT CACCACCATC ATAGGTTTCT TCCTGCCACA GGCGCTGGGC
AGCGGCGACC TTGCCATCAG CCACGCCATC AGCGAACATC CCAGCCTTGC GCTACTGGTC
GGCTTGTTGC TGGGCAAAAT CATCGCCACC ATAGCCGCCA TCGGCCTTGG GATCCCAGGT
GGCATCATAG GCCCGCTATT TGGCATAGGC GCGTTAATTG GCGCCATCCT AGCCGTGGTC
AGTGCCATGT TGTTTCCTAC CATCACCCCC TATGTGGGCC TCTACACCAT CATAGGCATG
ACGGCCATGA TGGGGGTCTG CCTCAGCGCA CCCCTGGCGG CCCTGGTCGC CCTGCTGGAG
CTGACCAATA ACGCCGCCAT CATCTTGCCG TCCATGTTCG TGACCATTCC GGCGTTCCTG
ATCGCCCATC AGGCGTTCAA TACCAAGTCG CTGTTCTACA AGCAGATAGA GCTGATGGGG
CTGGACTACA AGGTCTCCTC GGTCAAACTT GGTCTGCAGA AACAGGGGGT GCGCGCCGTG
ATGGACAAGC GCTTCGTTAT CGTGAAAGAC AACGACGAGC TGCTGCTGGA GGTGCTTAAG
CGCGCCGAGG GGCGATCTGT GTTGATGCAG AACAATCAGG GCCAGATGGA GATGCTGCAG
ATAGAGCTGC AGGTCACCGA GGAGATGAGT ACCCTGACCC GTCACCCCAT AGAGGGCCTA
GTGGATACCG CCACCCTGAA AGAGGTATAC GACATTCTCT CTAAGGAGCG TCGCGGCGAA
GTATTTATCT ATCAGGATAA GCGCGACAAT GTGGTCGGAG TGATCAGCTG GGTGATGCTG
CAAAAAGAGA TCAACCAAGG GCAGATTTAG
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| Protein sequence | MQLRINSAIQ QCQKYLNTDL KDKLAQAKIS VQLCGLALAF ALVASGVIIL FRLLLLWLNQ
LTQTQEWQFT GNLGDWRVLL PLLGAILIWF VAVLGSKRYK RMGIAYVMQR MKLHYGKIPL
QSAPGQFFQA LFALATNFSV GREGPAIHLG AVSASVMAEK FKLPDNSVRI MCASGIAAGI
AATFNAPLAA VIFVFEVILR EYKVHYFFPI MLSAICGALS SQLVFGNIHE YDQIGVSHIP
LSQYPVLALC GVTLGCIAAL FNHTLLKVTA KGQQHPLILR LLIAGLITTI IGFFLPQALG
SGDLAISHAI SEHPSLALLV GLLLGKIIAT IAAIGLGIPG GIIGPLFGIG ALIGAILAVV
SAMLFPTITP YVGLYTIIGM TAMMGVCLSA PLAALVALLE LTNNAAIILP SMFVTIPAFL
IAHQAFNTKS LFYKQIELMG LDYKVSSVKL GLQKQGVRAV MDKRFVIVKD NDELLLEVLK
RAEGRSVLMQ NNQGQMEMLQ IELQVTEEMS TLTRHPIEGL VDTATLKEVY DILSKERRGE
VFIYQDKRDN VVGVISWVML QKEINQGQI
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