| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0899 |
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| Symbol | |
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| ID | 4920875 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1019081 |
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| End bp | 1019917 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640162431 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001093029 |
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| Protein GI | 127511832 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.43799 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCTCA GAGCCCTGAG TTACTTTGTC GCCGTCTACG ATAAGGGCAC CATCAGCGCC
GCCGCCAAGC AGTGCTATAT CGCCCAGCCC TCTATCTCCT CGGCCATCAG TCAACTCGAA
GACGAGCTCA ACACTCAGCT GTTCCAGCGT CACGGCAGAG GTGTGAGCCC AACAGAGTCG
GCAGAGCGCC TCTATCCCCT GGCTCAGCGG CTGCTAAACG AGTCCAAGGC GATCGCTTCG
CTGTTTAATA CGCCAGAGCA GCGCCAACCC TTCAAGCTTG GGCTGATCAA CTCCCTCGGG
GTGCAGCGCA TGAGCATGCT GCTCAAAGAC TTCAGCCAGG CCTGCCATGA TATGGAGCTC
ACCCTGGTCG AGGCCAACGA GCCCTGCGAC GCCCGCATCA TCACCACCAG TCAGCTAAAG
TCGGATGAGG TGTTTCAGCC CATCTGGCAT GACGACTACC TGCTGGCGAT CCCCTCGACC
ATGAGCCTGG CCCTGAAGAA GGAGATCCGC CTGCAGGATC TTAGCGGCCA GCCCTTCATC
CACCGCGCGC CCTGCGAGGC CCTGGCGGAT CTGCAGCAGC TGATGGATCT CGAGGGGATA
AAGATGCAGA TCCGCGCGCG GATCCAGACG GTAGAGTACG CGGTAGGCTT GGTGGCGGCC
GGGGTCGGCA TCGCCCTGGT GCCCGCCCTG CCGGTATTGA TGGAGCAGAG CAACATCATC
TATAAGGCGA TTGGCGATCT GCAGCTCAGG CGCACCGTCG GCCTGGCCAT GCAAAGAGAG
GGTGAGCGCA CCGAGCAGCA GAAACAGTTG CAACAAGTCA GCAAACTCTA TAGCTAA
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| Protein sequence | MNLRALSYFV AVYDKGTISA AAKQCYIAQP SISSAISQLE DELNTQLFQR HGRGVSPTES
AERLYPLAQR LLNESKAIAS LFNTPEQRQP FKLGLINSLG VQRMSMLLKD FSQACHDMEL
TLVEANEPCD ARIITTSQLK SDEVFQPIWH DDYLLAIPST MSLALKKEIR LQDLSGQPFI
HRAPCEALAD LQQLMDLEGI KMQIRARIQT VEYAVGLVAA GVGIALVPAL PVLMEQSNII
YKAIGDLQLR RTVGLAMQRE GERTEQQKQL QQVSKLYS
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