| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0794 |
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| Symbol | |
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| ID | 4920708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 906794 |
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| End bp | 907978 |
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| Gene Length | 1185 bp |
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| Protein Length | 394 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162327 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001092925 |
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| Protein GI | 127511728 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAGTA AGCCAAAAAG CTTTGACGAA CTCCTAATCC AAGAGACCCA CATCTATCTT
TGTCGCTCGG TAAAATGGAC CGCCTATCTC TCCGTGTTCC TACTTGTCGC CATCTTCCTT
GCGTCCATGC TACAGAAGAA TAGTCTTCTG ACGCTGCAGG ATCTTCTGGT GCTGCAGATG
CCGACCCTAT GCATCGCCCT GTTTGGTCTG GCGGGGATCC TCTATCGTCA GCCAGAGCAG
CATCGCATGG GGCTGGTGTT GGCCTATCTC TTGGTGTTAG AAGTTGCCTG GATCTATTTT
GTGGTGGGCC ATTACTGGCT CACCAGCTCC TATAACCTGT TGGGTGAATA TGGCTCTCTT
GCCACAGTCG ATTCGGTAAC CGACGTGCTG GTATTTACCT TCGCCATCTC TCTCTATCCG
GTGCGCCGCT GGCTCCTGGT CAGCGTGGTG CCTCTGCTAT TGGTTAGCCT GGTGACCCGG
CTTATCGAGA TCCCGGAAAA TCCTATCTTT GCCCTGACCA AGTTTGTCTG TCTCTTGGTG
ATCATCATTA CCGGGCAGAA GGTGCTGCTG CAATGGTTTC GTAAGGCAAT CTTGCGCGAC
GCCGAGAAAC AGCAGCTGTT GCAGCAGTTT AAGCGTATGG CGCTGATAGA TGGTCTAACT
GACCTGAGTA ACAGGCGTCA TTTCGATGAG GTGCTCGCCC TGGAGATTAA GGCTGCCGAG
CGCACCGGTG ACCCCCTGAG TATGATCCTG CTGGACGTGG ATTTCTTCAA GCGCCTTAAC
GACAGCCTGG GCCATAGCGA TGGCGATCGC TGTCTGGTAA GGCTGGGTGA GGTGTTACAC
GGGGTGGCCT CCCGGCCTCG GGATCTGGCG GCGCGCTACG GCGGCGAGGA GTTTGCCATC
ATTTTGCCCG ATACAGATCT CAGTGGTGCG CGTCATATTG CCGAGCAGAT ACGTTACGAG
CTCAAGGCCG CTGAGATCCC CCATCCAGAC TCGACGCTAG GCGCCTATGT CACCGTCTCT
CAGGGGGTCT GTTTGTGGCA GCCGGGCTTG GATGCGGATG AGCTGCTGGC CAGCGCCGAT
CAGCTTCTCT ATCAGAGCAA GGCCCAGGGA CGGGATAGAT GTAGTACTGG GGTGGCCAAG
GGGGAGGCGG CCGAAGATAA GGTCGTCAGT TCCTACCTGT CTTGA
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| Protein sequence | MNSKPKSFDE LLIQETHIYL CRSVKWTAYL SVFLLVAIFL ASMLQKNSLL TLQDLLVLQM
PTLCIALFGL AGILYRQPEQ HRMGLVLAYL LVLEVAWIYF VVGHYWLTSS YNLLGEYGSL
ATVDSVTDVL VFTFAISLYP VRRWLLVSVV PLLLVSLVTR LIEIPENPIF ALTKFVCLLV
IIITGQKVLL QWFRKAILRD AEKQQLLQQF KRMALIDGLT DLSNRRHFDE VLALEIKAAE
RTGDPLSMIL LDVDFFKRLN DSLGHSDGDR CLVRLGEVLH GVASRPRDLA ARYGGEEFAI
ILPDTDLSGA RHIAEQIRYE LKAAEIPHPD STLGAYVTVS QGVCLWQPGL DADELLASAD
QLLYQSKAQG RDRCSTGVAK GEAAEDKVVS SYLS
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