| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0767 |
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| Symbol | |
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| ID | 4921264 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 875149 |
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| End bp | 876408 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640162300 |
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| Product | ATP-dependent RNA helicase SrmB |
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| Protein accession | YP_001092898 |
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| Protein GI | 127511701 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0735156 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTATAATG CGCCGCTATT ATTTAGAGAG ACGCAGCGCA TGCAATTTGA AGATTTCCAC
CTTGACGACA CCCTGCTCGA GTCGCTCAAG GCGATGGGCC ATCTTGCCCC GACCACCATC
CAGCAACAGA CGATCCCCCT AGCCCTGGAG CACAAAGATA TCCTGGCGAG GGCACCGACA
GGCACAGGCA AGACCGCCAG CTTCCTGCTA CCGGCGCTGC AACATCTGCT GGACTTCCCC
CGCCGCTACT CGGGCCAAGC GCGCGTGCTG ATCCTCGCCC CAACCCGTGA GCTGGCCAGC
CAGGTACACA GATACGCCAG CCACCTGGCC ACCGGCCTGG GGCTGGATAT CGCCATCATC
ACGGGCGGTG TGCCTTACGC TCCGCAGGAG CAGGCGCTCA AGGAAAATAT CGACATTCTG
GTGGCCACCC CCGGCCGTCT GATGGAATAC CTGGACAAGG AACTCTTCGA CGCCCAATCG
GTGGAGATCT TGGTACTCGA CGAGGCCGAT CGCATGCTGG ACATGGGTTT CTCCTCCGCG
GTGCAGTCTA TCGCCATCGA GGCGCAGCAG CGTAAGCACA ACATGCTGTT CTCTGCGACC
CTGGAAGGCG GCGGTGTGAG TCGATTCGCC GAGATGCTAC TGACCAATCC CGTAACCATT
GAGACTAAGC CGCCCCGCAG CGAGAAGGCC AAGATCCATC AATGGATGCA CCTGGCCGAT
GACAAAGAGC ATAAGTTTGC CCTGCTGTGC GACATCCTCA AGCGTGAAGA GGTTAGCCGC
GCCATCGTCT TCGTCAAGAC CCGCGAGGTC GTAGCCAGCC TGGAAGGTCA GCTGCAACAG
GCAGGTATCC ACTGCGCCTT CATGCGTGGC GACATGGAAC AGAAGGCGCG CTTTCAGGCG
CTGGGTCGCT TCACCAAGGG CGAGGTTAAC GTGCTGCTGG CCACCGACGT GGCGGCCCGC
GGTATCGACA TCGACGGCAT CACCCATGTG ATCAACTTCG ATATGCCGCG CTCGGCAGAC
ACCTATGTGC ACCGCATCGG CCGTACCGGC CGCGCCGGTA ACAAGGGCAC GGCCATCTCG
CTGGTCGAGG CCCACGACAT GCGTGTCGTC GCCAAAATTG AGCGCTATAT CGAGCAGCCG
CTGAAACGCC GGGTGATCGA CTCGCTGCGT CCTAAACACA AGGAAGCTAA GGTGCCCACC
AAGAAGAAGG TGAAGAGCAG CGACAAGAAG AGCCCGAAGA AAGCCAAGAA GAAGCGCTAG
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| Protein sequence | MYNAPLLFRE TQRMQFEDFH LDDTLLESLK AMGHLAPTTI QQQTIPLALE HKDILARAPT
GTGKTASFLL PALQHLLDFP RRYSGQARVL ILAPTRELAS QVHRYASHLA TGLGLDIAII
TGGVPYAPQE QALKENIDIL VATPGRLMEY LDKELFDAQS VEILVLDEAD RMLDMGFSSA
VQSIAIEAQQ RKHNMLFSAT LEGGGVSRFA EMLLTNPVTI ETKPPRSEKA KIHQWMHLAD
DKEHKFALLC DILKREEVSR AIVFVKTREV VASLEGQLQQ AGIHCAFMRG DMEQKARFQA
LGRFTKGEVN VLLATDVAAR GIDIDGITHV INFDMPRSAD TYVHRIGRTG RAGNKGTAIS
LVEAHDMRVV AKIERYIEQP LKRRVIDSLR PKHKEAKVPT KKKVKSSDKK SPKKAKKKR
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