| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0766 |
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| Symbol | |
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| ID | 4921493 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 873696 |
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| End bp | 874919 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640162299 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001092897 |
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| Protein GI | 127511700 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0817385 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTCAA TGATAAAAAT TATCCTACGA AGAGTTTTCC CCCCTTTTCT TATCCTGATC
GTCTTCGGCC TGTTTGCCGC CCTCTTGATG AGTACTCAGG AAGCCCCAGA GCAGAAAGAG
GAAGAGATGC CGGTTCCTAT AGTGGACGTG ATGCCGGTAC GAAGTGAAAC CGTTTCATTA
AACCTGCCCT CCTACGGCGT GGTGCTCCCC AAGAACAAGA CCCAGCTGGT CACAGAGGTG
CAAGGACGCA TGCTGACCAT CTCGGACAAG TTTGTCGCCG GTGGCATAGT CAAGCGCGGC
GATATGCTGG CGCAGATCGA ACCCTCGGAT TACGAGGCGG ATCTGATGCA GGCGCAGGCC
ACCCTGGCCC AGGCCAAGGC GGCACTGGAT GAGGAGATCG CCCGCGGCGA AGTGGCCAAA
GAGGACTGGA AGGGTTACGA CGGCGGCGTG CCGCCAGAGC TTGGCCTACG TGTGCCACAG
CTCAAGAAGG AGCAGGCCAA CGTCAAGTTT GCCGAGGCCG CCCTGGCCCG CGCCCAGCGT
AACCTGGAGC GCACCACCAT ACGCGCGCCG TTCGATGGCA TCATCAAGTC CCGTAACGTG
GATCTAGGCC AGTATGTCAC CCTGGGCACT AACCTGGGCG AGCTGTACGA CACCCGCATC
GCCGAGATCC GTCTGCCGCT GGCCAACCAC GAGCTGGCCT ACCTGGAATC TATCGACAAT
CCCGATACCC AGGTGACCCT GAGCGCCGAG CTGGCGGGCC GCACGGTGAA CTGGACAGGC
AAGATAGTAC GCAGCGAAGG GGTGATCGAC GCCGACAACC GCATGGTCTA TCTGGTGGCC
GAGGTGAAAG ACCCTTACTT AAGACAGAAC AAGACTGAAG GCCAGCTGCC GCTGAAATAC
GGCAGCTTCG TCAACGCCAT CATCAAGGGC CGCACCGTCG AGGGGATCGT CAAGCTGCCT
CGCTATATCG TCCGGGATCA CCAGGTCGCC GTAGTACGCG ACGACAACAC GCTAGAGATG
CGTGAGGTCA ACGTGGTGCG CAGCGATATC GACAAGGTCT ATATCAAGGA CAGCCTGAAA
GATGGCGAGC GCATCTCGCT GACCACCATC AACAACATGG CTACCGGCCA GCTGGTGAAG
GTGATCGGCG AAGAGGACAA GTCTCAGAGC CAGGACAAAG AGGATGAGAG CCAGCAGACC
CTAGTGGCAG CAGGTGATCA GTAA
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| Protein sequence | MKSMIKIILR RVFPPFLILI VFGLFAALLM STQEAPEQKE EEMPVPIVDV MPVRSETVSL
NLPSYGVVLP KNKTQLVTEV QGRMLTISDK FVAGGIVKRG DMLAQIEPSD YEADLMQAQA
TLAQAKAALD EEIARGEVAK EDWKGYDGGV PPELGLRVPQ LKKEQANVKF AEAALARAQR
NLERTTIRAP FDGIIKSRNV DLGQYVTLGT NLGELYDTRI AEIRLPLANH ELAYLESIDN
PDTQVTLSAE LAGRTVNWTG KIVRSEGVID ADNRMVYLVA EVKDPYLRQN KTEGQLPLKY
GSFVNAIIKG RTVEGIVKLP RYIVRDHQVA VVRDDNTLEM REVNVVRSDI DKVYIKDSLK
DGERISLTTI NNMATGQLVK VIGEEDKSQS QDKEDESQQT LVAAGDQ
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