| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0747 |
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| Symbol | |
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| ID | 4920629 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 847984 |
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| End bp | 848940 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640162280 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_001092878 |
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| Protein GI | 127511681 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCCGG AAAACATTCA CACGGGTGTG AGTATACTTG AAAACGATAA CGCGCAAATC
AACTTAGTCA GGTGGATGCA TCAGTGCGAG CTGATGAAAC GCTATTTCGA AGCGGATGTC
GCCTTTGTCG CCCAGCAGAC GGACCTGGGT TTTGAGATCA TCGTCAGCTC CATCAACGAT
ACCCGCAGGT TTCTTTCCGG CACCCTGTAT AACGAGAAAT TCGAGCTCTT TACCCGCCTG
TCCAACAGTC AGCCCGAAGG GGTCAACCTG GATCTGAGCC GAGAATCCAA CGCCGAGCTC
CCCAAAGATC TCGCCACCGC CAGCAGCATG CTGTCCAGGC CGATCCTCTG GCCCGACGGC
ACAGTATTCG GTTGTCTGTG TGTGATCAAT CCGGCCAGCA AGGAGACCGC CAGCACCAAC
GCCTTCATGC TGGAGCCCTT CCAGATCTTG CTGCAACAGG ACCTGGCGCT CCTGTGTCAG
AGCCAGCGCA TCGAATCACT GTCGATGCGG GATCGCGACA CGGGCATGCT CAATCACTAT
GGCTTCATCA TGATGGCGCC GCGACAGCTC AACCTGGGCC GCCGCTTCGG CGCCCATGCC
GGCATCCTCT TCTTCGAGCT CTACCCCAAT CCGCCGCTGA TCGACGAGAT CGAGGACAAG
CATATCCGCC TGCTGGGCAA CATCATTCAG GACACCATAC GCACCGCCGA CATCGCCGCC
CACTACAGCC ACAGCCAGTT CGTGGTGCTG GTGTTTGTGG ATACCGAGCG GGATCTCAAC
CACATCAGCC ACAGGGTCGA GAAACTGCTG CTACAACAAA ACGATCGCCT CAAGTTGGAT
TCGGGCCACT CCTTCTTCGC CCCCGACTCC TCGGCCAAGC TGGCGCCCAT GCTGGAGAAG
GCTAAGCAGC AACTCAAGTC TCAGCAGAAA GATGATGAAA TTGAGACAGA GGTCTAG
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| Protein sequence | MLPENIHTGV SILENDNAQI NLVRWMHQCE LMKRYFEADV AFVAQQTDLG FEIIVSSIND
TRRFLSGTLY NEKFELFTRL SNSQPEGVNL DLSRESNAEL PKDLATASSM LSRPILWPDG
TVFGCLCVIN PASKETASTN AFMLEPFQIL LQQDLALLCQ SQRIESLSMR DRDTGMLNHY
GFIMMAPRQL NLGRRFGAHA GILFFELYPN PPLIDEIEDK HIRLLGNIIQ DTIRTADIAA
HYSHSQFVVL VFVDTERDLN HISHRVEKLL LQQNDRLKLD SGHSFFAPDS SAKLAPMLEK
AKQQLKSQQK DDEIETEV
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