| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0721 |
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| Symbol | |
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| ID | 4921131 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 821137 |
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| End bp | 822399 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640162254 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001092852 |
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| Protein GI | 127511655 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAAAG ATACCAGCGC ACAAGATAAG CAAGTTGCCC CCAGCCTCGG ACGCCGCATC
AAATGGCCTG TCACTATCGG CGCAGGCGTT CTCCTGGTTT CTGGTCTGGT GTGGGCCAGC
GTCAGTGGCA GCAGCGTGAG CGAGTCTATC GACCGTAGCG AGCTGCGTTT TGCCACTCTG
GAACGCGGCA CCTTAGTGCG TGATATCGCC TCTACCGGCA AGATAGTCGC CGCCAACGCC
CCTATCCTCT ACGCCCCAGA GAAGGGCACG GTAACCTTAA TCGCCAACCC GGGTGACAAG
GTGGAGCAGG GCCAGGTGGT TGCCACCATA GAGAGCCACA GCCTGACCAA CAACCTCAAG
CAGCAGCAGG CGCTGCTGGA AGGGATGCAG AGCAGCCTTG AGCGTGCCCG TCTCGATGCC
CGTCGTGATC AGCTTAAGGC GATACAGACC CTGGATATGG CCAAGGTGGA TCTCGAGGCG
GCGGATCGCG AGAGTCGCCG TGGCGACCAG CTGATCGAGT CCAGCCTGAT CTCTAAGATA
GATTATGAGA AGAGCAAGGA TGAGCTGCAC AAGGCCAAGC TGCTCTACGC TCACGCCCAG
CAGGAAGCCG AGCTGATGAA AGATACCCTC AGCTTCGAGC TGAAGAACAA GGCCTCAGAG
GTGGATCGTC AGGCCCTGGT GGTCGCCGAG CTTGAACGTC AGGTGGCGGC GCTGAACATC
ACGGCCCCCG TCGGCGGCAT CATAGGTAAC TGGCTGACCG AGCAGAAGGC CCGTATCGGC
CAGAGCCAGC CCATATTGAC CGTTGTGGAT CTCAGCGCCT TCGAGGCCGA GCTGGCGGTG
CCAGAATCCT ACGCCGACGA GCTGGGGATT GGCATGGATG TCGAGCTTAA CTTCGGCGGC
CAGCTGGTGA TGGGCAAACT GTCGGCCATC TCTCCCGAGG TGCGCAACCG TGAGGTGACT
ACCCGAGTGC GCTTCGAGCA GCAAGCTGCC CTGCACCTGC GTCAGAACCA GCGTCTGTCG
GCCCGCGTCT TACTGGAAAA TCGTCCCGAC GTGCTCATGG TCAAGCGTGG CCCCTTCGTC
AACAGTGGCG GCGGCACCCT GGTCTATGCC GTCAAGAACG ACCTGGCCGA GCGCACCGAG
ATCCAACTGG GTGCCCGCAG CATGAGCCAC ATAGAGGTGG TCTCGGGCGG TGAGGTCGGC
GACCAGTGGA TTATCTCCTC CACCGACGCC TTTAAGAACG CCGAACAAGT ATTGATCCGC
TAA
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| Protein sequence | MIKDTSAQDK QVAPSLGRRI KWPVTIGAGV LLVSGLVWAS VSGSSVSESI DRSELRFATL
ERGTLVRDIA STGKIVAANA PILYAPEKGT VTLIANPGDK VEQGQVVATI ESHSLTNNLK
QQQALLEGMQ SSLERARLDA RRDQLKAIQT LDMAKVDLEA ADRESRRGDQ LIESSLISKI
DYEKSKDELH KAKLLYAHAQ QEAELMKDTL SFELKNKASE VDRQALVVAE LERQVAALNI
TAPVGGIIGN WLTEQKARIG QSQPILTVVD LSAFEAELAV PESYADELGI GMDVELNFGG
QLVMGKLSAI SPEVRNREVT TRVRFEQQAA LHLRQNQRLS ARVLLENRPD VLMVKRGPFV
NSGGGTLVYA VKNDLAERTE IQLGARSMSH IEVVSGGEVG DQWIISSTDA FKNAEQVLIR
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