| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0702 |
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| Symbol | |
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| ID | 4921832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 796784 |
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| End bp | 797866 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162235 |
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| Product | rhomboid family protein |
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| Protein accession | YP_001092833 |
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| Protein GI | 127511636 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAATA TCTGTCCGGG TTGCCACGAT GGGCGACTGA GAGTGTTTAA ATTTCACGGC
GAAGAGGTAG ATTGCTGCCG CCAGTGCGGT GGCCTCTGGT TCGAGAATGG TGAGCTCAAC
GCCGCCCTGT CTAAGGCCGA TAACGGCGAC GACAACGTGC GCATCGAAGA GACCCTAGGC
GATCAACTGG GGATCTCCAG TCGCTGCTGC CATCGTTGCG ACCTTGCCAT GCAGCGCTAT
CATCTGATGG CTGGCTATGA GATAGAGGTG GATCTGTGCC ACGGCTGTAG CGGCATCTGG
ATAGACGAGC ATGAGCGCAC CAAGGTGGTA CAGTCGCCCA AGGTGCGGCA ACTGCTGGAG
GAGTTGAATG GCAGCATCAG CGTCAAGACC TGGCTGTTCC AGTTCCTCTC TAAGATGCCG
GTGGAGTTTA ACCTCAAGCC TAAGTCTACG CCCCTGGTGA CCTATCTGCT GCTGGCGCTC
AATATCCTGA TCTTCTTCGC CTACGGCTTT AACCTGAGCA CCACAGATAT GGTGTTTGAG
AACTTTGCCA TGCGTTCCAA CGATCTGCTT GCAGGACACC ATCCCTGGAG CCTGGTGAGT
CATATGTTTC TTCATGGTGA CATCATGCAC CTGGCGGGCA ACATGTATTT CCTCTATGTG
GTGGGGGATA ACCTGGAAGA TGTGCTGGGC CGCACTAAGT TTTTCGCGCT CTATCTCCTG
TGTGGCCTGG CGGCTGCTGC GGCGCAGATC GCCGCCGATC CGGGCTCCGG CATCTATATG
GTAGGCGCCA GCGGCGCCAT CGCCGGCCTG TTCGGCATGT ACCTCATGTG GTTCCGCCAT
GCCAGCCTGA CCTTCATGTT TGTGGTGTTT CAGAAGAAGC TCAGTCCTAT GGCCTTCTTC
GCCATCTGGC TAGGCTTCAA CATCTTTGGT CTTGTCATGG CCGGTCAGGG CGTGGCCTAC
TGGGCCCATA TAGGTGGCTT CGTGATGGGA CTTATCCTGG GCGTGACCCT AAAGACTCGG
GTGATGAATA ATAACCCTAT GCTGGCGCTG CTCAACGAGC CAGAGGTGAA GATCGCCCGC
TAG
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| Protein sequence | MTNICPGCHD GRLRVFKFHG EEVDCCRQCG GLWFENGELN AALSKADNGD DNVRIEETLG
DQLGISSRCC HRCDLAMQRY HLMAGYEIEV DLCHGCSGIW IDEHERTKVV QSPKVRQLLE
ELNGSISVKT WLFQFLSKMP VEFNLKPKST PLVTYLLLAL NILIFFAYGF NLSTTDMVFE
NFAMRSNDLL AGHHPWSLVS HMFLHGDIMH LAGNMYFLYV VGDNLEDVLG RTKFFALYLL
CGLAAAAAQI AADPGSGIYM VGASGAIAGL FGMYLMWFRH ASLTFMFVVF QKKLSPMAFF
AIWLGFNIFG LVMAGQGVAY WAHIGGFVMG LILGVTLKTR VMNNNPMLAL LNEPEVKIAR
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