| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0642 |
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| Symbol | |
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| ID | 4923785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 730453 |
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| End bp | 731316 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162175 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001092773 |
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| Protein GI | 127511576 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCAATC TTATTGTCGC CTGCTTCGTG ATCTCCTTCG TTTTCCTGAC CGTAAGCTGC
GCCCGCATCT ACCACAGAGT ACCGAAGGAA AACCGTGAAT TTATGGACCC GCTTTCGCCG
GGTCTTAAGC TTATCTGGCC CCTGGTGCGC CTGCTGGCCT TCTATGTCAG TGAGAACCTC
AGCGTCGATT ATCTGGAGCG GGTCTCCAAG AAGCTCCAGG TCTCAGGGTT ATCTTACATA
ATGACCGCCG AGCAATACTT TGCCATCCGC ATTCTGAGCA CCCTGTTTAG CCTGGGGCTG
ACGCTCATAT GTAGCGCCAT GCTCGATGCC TATGTGCCTC AATATCTGCT GCTGGCCGCC
GTGTTCGGTT ACTTTCTGCC TGTGATGACC CTCAACGATC TGCGTAAGAA ACGCCAGGGG
CTGATCGTCA AGAGCCTGCC CGTGTATCTG GACTACCTCA CTATGTCGAT CGAGGCGGGC
CTGAACATGA CGGGCGCACT CAGTCAGGCG GTCGAGCGCG GCCCAGCCGG ACCACTGCGC
ATCGAATTTG AGAAGGTAAT TCGCGACATG CGCGCCGGTA TGTCACGTGC CCAGGCGTTT
CGTAACATGG CCGATCGTGT GCAGGTGACC GAGGTCAACA GCCTGGTCAG CGCCCTGGCA
CAGGCGGAAA GAACCGGTGC CAGCCTGGGC CAGACACTGA GGATCCAGTC TGATCAACGC
CGAATAGAGC GTTTTCAGCG CGCCGAGAAG AAGGCTCTGG AAGCACCGGT CAAGCTGGTC
TTCCCGCTGA TCGTCTTCAT CTTTCCCGTG ACCTTTATGA TCTTGGCCTT CCCGATTGCC
ATGAAGTTTA TGTACGAGCT CTAA
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| Protein sequence | MVNLIVACFV ISFVFLTVSC ARIYHRVPKE NREFMDPLSP GLKLIWPLVR LLAFYVSENL
SVDYLERVSK KLQVSGLSYI MTAEQYFAIR ILSTLFSLGL TLICSAMLDA YVPQYLLLAA
VFGYFLPVMT LNDLRKKRQG LIVKSLPVYL DYLTMSIEAG LNMTGALSQA VERGPAGPLR
IEFEKVIRDM RAGMSRAQAF RNMADRVQVT EVNSLVSALA QAERTGASLG QTLRIQSDQR
RIERFQRAEK KALEAPVKLV FPLIVFIFPV TFMILAFPIA MKFMYEL
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