| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0638 |
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| Symbol | |
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| ID | 4923646 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 724655 |
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| End bp | 728878 |
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| Gene Length | 4224 bp |
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| Protein Length | 1407 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640162171 |
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| Product | cell surface receptor IPT/TIG domain-containing protein |
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| Protein accession | YP_001092769 |
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| Protein GI | 127511572 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.652963 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACACA CGTCTCGCCT GACCAAGCAA CATTGGCTGG CACTCATGCT GACCTCGACC
CTGGCAATAA CGGGGTGTAA CGGCGAACTC AAAGAGGGAG AAGGCCCTAA CTCTCAGGTG
CCGACAGATC CTGTGGACCC TGTAGATCCC ACCAATCCAA CTGAGCCGAC CGAACCTACG
GATCCTACCG ATCCCACAGA GCCACCTCAG GTGGGCACCT GGGAAAACAG GGATGAAGAT
GGCGACGGCG TGGTAGATGA ATTGGATGAC TATCCGTTTG ATGCTAGCAA GCATGCTTAT
CCTCTGTTTG TAGAACAAGA GCCAAATGAC AATCCTGCGG TAGCCACCCC AATCGAAATC
GATCTCGGCG TCAGGGTACA AGGTGTCATT GACTCAGAGT TTGATAAAGG CGACCTGTTT
AAATTCCATG TCGATAAGCC GCAATCTTAC ACAGCCTATT TCACTTCACC TTCGGCAAGG
TTTAAACCTC AGGTTTATGT TTCAGATGCC AATGGTTTGG TCATTAATGA CATTCAACTA
TATCGATACA CTCGTGCAAA TACCTATGTA GTGAACTTTC CCGTCTATAC ACCAGGTACT
TATCAGCTCA GTATCATAGA TGAGAACTAT GCTGGCGGTA GCGACCTCAC CTATCAAGTG
ACTATGTTTA ACGATCAGGA TATCGACGGA TTCGACGATA CGAAAGAGCC CGCCTTAGGC
GCAGATATCA ATGAAAATGA TCAAGATAAA GACAAGATCA TTGACGGTAT CGAATTCAGT
ATGGCCTTGG AGAGTCTAGG ACTAGACACA GACCGGGACG GCATTCCCAA TTGGTTAGAT
ACCGACTCAG ACGGCGATAG TTTCAACGAT TCCATCGAAG GCATGGAAGA TTTGGACAAT
GACGGCGCCC CCAACTTCCT TGAGCGCGAT GCCGACGGTA ACGGTATTGA TGATCAACTA
GAAAGTGGCA ACAGCAATGA TCCCACTAAC ACGGATAACG ATAAATTCAT TGATCACTTA
GACAACGACG ACGACAACGA CGATATCTTC GACAAGAATG ACGCTCAACG TTTAATCCCG
GCCACTATTG TCTCCTGGAC CAAGCCAGGC GATCTCTTTA TCGAATCTCT GCACACCCTC
TTCCAGCAGA ATAAGATCAA AAACTATCTC AGAGCCGGGG ATGAATTCGA ACTCACCGTC
GAAGGAGTGT CTAGTGCGTC TGAAAACACG CTGTTAGTGG TGAACATAAA TGGCAGAATT
TACAACCTAT TTCCAAAGCA GGTCGAACAC GCATCGCAAA GAAGCCACCT AAGGTTTTTA
CTTCCCCAAG ATATGGGTAA GGGCGCGCTC TCGATTGTTA TCGGCACAAA TAAATCAGAC
CCATTTCCAA TTGAAATTGG CGACGCTGAA CTGCCAATAC TCATGAGTTC TAACCCTAGA
AGTCTCAAAC CAGGCCAACA GATAACACTT AGTGGTGACA ACTTTGATGA AGACACCAGC
GTTTTCTTCA ACAACCAACC TGTCAATGCC CAGTTCGTCG ATGAAAACAC TGTTCGAACC
ACAGTGCCAG AGACATTGAG TGGTGGTAGC TACTCTGTCA GCAATGCTCA CGGACAGAGT
AACCCCATCA CCTTCATCAT CACACAAGAG ATAGCCGTTA ACGTCCTCGA ACCTTCAGCC
AAACCTTTAG CTGCGATAGG GGGCATCTAT CCCGAGATGG CCAAGGCGCT TAATGGTAAT
AGCTTCGAAT TGGAGAAAAT GGGGAGTGAG GCGGAAGTCA TCTTCTCTTA TACCCAGGGT
GCCGACGGCC AACTCGAAGC CTACCTGAGT ACAGTCTATT CCATGAACCA AGACAGTATC
TCATTGAGCT TCGAATCGAC AGCCTTGGCA AGCTTGGTAC TTCATATGAA CTATTACTAT
GAGGCAAAAG GTGTCGGCAC AGAGAAGTTC ATGCAAATAG TGCAGACAAC ACAGGCATAC
CAAGCTTACC TCGCAGAGGC CAAAGCGGCA CTAGCCAAAG ATACGAGCTT CTTCGGCTAT
AAGGCGAGAA AAGCTGAAGC TTACGATCTA CTCAACCGGT TTGAGTCCAA AATCAAGGAA
GAGCTAACCT CAAAGCGTTT GCTGAAATCC TCGTTGTCAC CATCCAAGGC TAGGTTTACT
CCTCTAGATG ACGATGCCGC GGGATCGAGT ACCAACCAGG CACTATCGGC TATTGAACCC
AGCATAGTCT CCTATCCAGA GACTAATGGC ACTTGGCAAG CCTTCGACAT GTCGATGGCG
GCCACAACCT TCGCCGAAAA CAGTACAGAG ATAATGAATA ACTGTGGCGA AGGGGTCGAT
CCCAAGTGGT ACCAAGTATT GAATGCCGAT GGCTGCGTTG AAATAAGAAA TCGCAGTCAG
CTCTACCTAA GCGCCAGAAT CTATCCTATC GATTCCAAAA CAGGAGAGAT AAAAACAGAT
CTAGCCTCTC TCAACAAACC GATTGCCGAC CATATCACTA CCCCTTGGGA TTCGGGTATG
ATGGGGCCGC AATCTGGTAC CTGGTTAGGC ATTTCGCTCT GGTCGAGTGA TTCCCTTATC
GACAAGTGCG TCTATACAGA TTGCCTATAC CAGATCATCA CACCTGGCGT TGATGGCATT
TTCGGCCCCA GCCCATTCAG CTTCAGGGGA CAAGAGGCCT ACGATAAGCG AGCTCAAGAT
GCCCGTAAGA TGTTGGCGAT CAGGACCATT ATAGATAATG TCGTCATTCG GTTTTACTCC
ATATTATTCG ATGCGGCGGG CATAGACCTC AACGACAGCA AATACAAGAA ACAGGCAACA
GCCCTGGCAA TCGTCAAGGC CGTTTATCAA TACCTGCCAG CCATCAGCAC AGAGATCGAC
AAACTAATGG CCAAGGATAA GCCAAGTTTT GACGACTGGC AGACCCTTGC GGCTAATCTA
GGGAAGGAGT TATACAGCAA AGAGATCAAG GCTGTGATCT CAGATCCAAC CAATCGTGCC
TCCTACGGCC CAGTCACCAT GGCACTTCTG ACTGCATTAG AGGTTGACGA GAAATACTTC
ATCAACAAAA TGCTGCAAAA GGTCGCCCAA AAATTTATTC CTGGCTGGGG GACTATTACC
TCGGTATATG AAGCCAGTAA GCTTGCGGAC TCTATGGTCG ATATGGCCAA AACCATAGAC
GATCTGGTCG ATGTGCCGAC CAAGCTCGAC TATATCGTTA CCTGGGGACT AAAGGCCTCA
GATATCACGC CAAGAGCCAT TGAGAAGACC CAAGAAACTA AGCGATTTAC CATAGTCGGA
AGTGGCATGG CCGTCGTTAA AGGGGTATTT GGTGATACCA AACCAGAAGT GAAAGTCTTC
GATCTGGGCA AGGGTGAGAA GCAGCTCGAC ACCAGTTTCG TAAGCGTCAA TAAACTGGGC
ACTGAACTGA CCTTTGACCT TAATGACATA AGCCAAATCG AGAATGCTGT AGGCCCCTTA
AAGGTTGAGG TTCACCACAG AGATGAGGTG GCCGAGGTAC CTTATGAAAT TCTAATCGGC
ACAGATCTCA CGATCACTAA CATAACGCCT AACAAGGCTT CTCCCGGCAC AGAGTTAGAG
ATAAGTGGCA TTGGTTTTAG TAAACAACCA ATGGGCAATA TCGTCACCTT TAGCGGTGCG
AATGGGGAAC GTATTAGAGC TGCGGTAAAG TCTGCCACCA CAGATACCCT AGTGATTATC
GTGCCTAATG GTGCGGTGAC TGGGTATATC ACCGTGGAGG TCGCCAATAT ATTGAGTAAT
CAATACCCAT TCGTTGGACC AAGCCAGCTA CTGATCACCT TTGGTGACAA TGGTAACTTT
AACGACGATG TGTTTAAATT ATCGGTCAAT AACAAGGTGA TGTATGACAA CAACCAACCT
CAACGCAAGG TGGGCCCACT AAACGTCTCG CTTGAGGAAG GTGAACATAC AGTCCAGTTA
ACAGGTATTC GCGCCGACGA CGGTATTGCC ACCTACTACA TTGAATTTGC TGGTGATGTT
GTCAATGTCA GCGGTGATGC GTTAACGGGT AGAGACTTAT GTCCAAATAC ACATAAGACC
TATAAAGTCA CCATCGCCAG CGGCGCTGAC AGCTCAGGGC AATCGGCTTC GTTAAAAGCA
CAGATACAGC CAATGATATT GCAACCCGAG TATGCCAATA TGGCAGCCGA GACACCAACA
GAGTGTCCCA AGGCCAACCA ATAA
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| Protein sequence | MKHTSRLTKQ HWLALMLTST LAITGCNGEL KEGEGPNSQV PTDPVDPVDP TNPTEPTEPT
DPTDPTEPPQ VGTWENRDED GDGVVDELDD YPFDASKHAY PLFVEQEPND NPAVATPIEI
DLGVRVQGVI DSEFDKGDLF KFHVDKPQSY TAYFTSPSAR FKPQVYVSDA NGLVINDIQL
YRYTRANTYV VNFPVYTPGT YQLSIIDENY AGGSDLTYQV TMFNDQDIDG FDDTKEPALG
ADINENDQDK DKIIDGIEFS MALESLGLDT DRDGIPNWLD TDSDGDSFND SIEGMEDLDN
DGAPNFLERD ADGNGIDDQL ESGNSNDPTN TDNDKFIDHL DNDDDNDDIF DKNDAQRLIP
ATIVSWTKPG DLFIESLHTL FQQNKIKNYL RAGDEFELTV EGVSSASENT LLVVNINGRI
YNLFPKQVEH ASQRSHLRFL LPQDMGKGAL SIVIGTNKSD PFPIEIGDAE LPILMSSNPR
SLKPGQQITL SGDNFDEDTS VFFNNQPVNA QFVDENTVRT TVPETLSGGS YSVSNAHGQS
NPITFIITQE IAVNVLEPSA KPLAAIGGIY PEMAKALNGN SFELEKMGSE AEVIFSYTQG
ADGQLEAYLS TVYSMNQDSI SLSFESTALA SLVLHMNYYY EAKGVGTEKF MQIVQTTQAY
QAYLAEAKAA LAKDTSFFGY KARKAEAYDL LNRFESKIKE ELTSKRLLKS SLSPSKARFT
PLDDDAAGSS TNQALSAIEP SIVSYPETNG TWQAFDMSMA ATTFAENSTE IMNNCGEGVD
PKWYQVLNAD GCVEIRNRSQ LYLSARIYPI DSKTGEIKTD LASLNKPIAD HITTPWDSGM
MGPQSGTWLG ISLWSSDSLI DKCVYTDCLY QIITPGVDGI FGPSPFSFRG QEAYDKRAQD
ARKMLAIRTI IDNVVIRFYS ILFDAAGIDL NDSKYKKQAT ALAIVKAVYQ YLPAISTEID
KLMAKDKPSF DDWQTLAANL GKELYSKEIK AVISDPTNRA SYGPVTMALL TALEVDEKYF
INKMLQKVAQ KFIPGWGTIT SVYEASKLAD SMVDMAKTID DLVDVPTKLD YIVTWGLKAS
DITPRAIEKT QETKRFTIVG SGMAVVKGVF GDTKPEVKVF DLGKGEKQLD TSFVSVNKLG
TELTFDLNDI SQIENAVGPL KVEVHHRDEV AEVPYEILIG TDLTITNITP NKASPGTELE
ISGIGFSKQP MGNIVTFSGA NGERIRAAVK SATTDTLVII VPNGAVTGYI TVEVANILSN
QYPFVGPSQL LITFGDNGNF NDDVFKLSVN NKVMYDNNQP QRKVGPLNVS LEEGEHTVQL
TGIRADDGIA TYYIEFAGDV VNVSGDALTG RDLCPNTHKT YKVTIASGAD SSGQSASLKA
QIQPMILQPE YANMAAETPT ECPKANQ
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