| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0545 |
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| Symbol | |
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| ID | 4922591 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 616103 |
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| End bp | 616711 |
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| Gene Length | 609 bp |
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| Protein Length | 202 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640162074 |
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| Product | ADP-ribose diphosphatase |
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| Protein accession | YP_001092676 |
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| Protein GI | 127511479 |
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| COG category | [L] Replication, recombination and repair
[R] General function prediction only |
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| COG ID | [COG0494] NTP pyrophosphohydrolases including oxidative damage repair enzymes |
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| TIGRFAM ID | [TIGR00052] nudix-type nucleoside diphosphatase, YffH/AdpP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000393147 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.372296 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCAGA AATTCACCAA TGAAGATGTA CAGATGCTGG GAAAACGAAC CCTTTTTCAG
GGGTTCTTTC GTATGGAAGA GTACAGATTC AAACATAGGT TGTTTGCCGG TGGCTGGAGC
CAGGAAGTGG TGCGTGAAGT GTTCGAGCGC GGCCATGCCG TGGTCGTGCT GCCCTATGAC
CCCGTGAGCG ACAAGGTGGT GCTGATTGAG CAGATACGCA TTCCCGTGGT GAATGCCGCA
ACCACCCCTT GGCTGCTGGA GTTTGTTGCC GGCATGATAG AGGAGGGTGA GAGTGCCGAG
CAGGTGGCTC ACCGTGAACT GCTCGAGGAG TCTGGCCTGG TGGCCAGCGA GATGCACTAC
ATCAGCCAAT ATTTTTCCAG TCCCGGCGGC ACCAGTGAGC GATTCGACTT CTACTGGGCC
AGGGTTGATG CCAGTCAGGC CGATGGCCTG CATGGTCTGG ATGATGAACA TGAGGATATC
AAGGTGCACG TGATGCCCCG TGAGGCAGCC TTTCAACTAT TGCAGGATGG CACCATCAAC
AACGCCTCGA CGGTGATTGG TCTGCAGTGG CTGCAGCTCA ACTACCAAAG CTTAAGGGCC
GCCAAGTGA
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| Protein sequence | MSQKFTNEDV QMLGKRTLFQ GFFRMEEYRF KHRLFAGGWS QEVVREVFER GHAVVVLPYD
PVSDKVVLIE QIRIPVVNAA TTPWLLEFVA GMIEEGESAE QVAHRELLEE SGLVASEMHY
ISQYFSSPGG TSERFDFYWA RVDASQADGL HGLDDEHEDI KVHVMPREAA FQLLQDGTIN
NASTVIGLQW LQLNYQSLRA AK
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